PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g012440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YB | ||||||||
Protein Properties | Length: 140aa MW: 15595.3 Da PI: 8.0827 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 163.6 | 2.7e-51 | 2 | 97 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +++dr+lPianv+r+mk++lP+nakisk+ak+tvqec++efisfvt+easdkc+re+rkt+ngdd++wal+tlG+++y++++ +l+kyre+e+e+ Csa03g012440.1 2 TDEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASDKCHRENRKTVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERER 97 689******************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.9E-48 | 2 | 120 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.35E-38 | 4 | 115 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-25 | 7 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.8E-16 | 35 | 53 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 38 | 54 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.8E-16 | 54 | 72 | No hit | No description |
PRINTS | PR00615 | 3.8E-16 | 73 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SDKCHRENRK 60 TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERAEH NKGSNDSGNE KGPSTRSDLQ 120 SQSTKFIRVV EKGSSSTAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 7e-40 | 1 | 92 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 7e-40 | 1 | 92 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00133 | DAP | Transfer from AT1G09030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g012440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029363 | 1e-174 | BT029363.1 Arabidopsis thaliana At1g09030 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-174 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F7G19 | 1e-174 | AC000106.1 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489638.1 | 1e-101 | PREDICTED: nuclear transcription factor Y subunit B-4 | ||||
Refseq | XP_010497678.1 | 1e-101 | PREDICTED: nuclear transcription factor Y subunit B-4 | ||||
Swissprot | O04027 | 3e-96 | NFYB4_ARATH; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | D7KIX6 | 9e-95 | D7KIX6_ARALL; Uncharacterized protein | ||||
STRING | XP_010489638.1 | 1e-100 | (Camelina sativa) | ||||
STRING | XP_010497678.1 | 1e-100 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09030.1 | 1e-98 | nuclear factor Y, subunit B4 |
Publications ? help Back to Top | |||
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