PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g004610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 302aa    MW: 35167.4 Da    PI: 6.6881
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g004610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.52.1e-2691353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkevl 93 
                     +G rF P+d  lv + L++ ve+k+ ++   i+++d+y++ePw Lp+  +   ++kewy+F+++ + +++  + ++r   k+g+W++  ++++++
  Csa03g004610.1   9 VGSRFVPNDLGLVRYLLRNMVERKQSSV--EITTMDVYQAEPWLLPHVSNRlfKKKEWYYFVPKFRDKRSsRSVPRRgGSKAGFWRSGVRKEDIK 101
                     79***********999999999999777..59**************5333345889*******988877615556667789************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++ +g k+ L++++  + + +ktdW m ey+l
  Csa03g004610.1 102 D-GNKIIGYKTPLTYHTIVNGEKKKTDWRMTEYSL 135
                     9.999***********99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.7597153IPR003441NAC domain
SuperFamilySSF1019412.88E-287152IPR003441NAC domain
PfamPF023654.3E-149135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGKPYHHLVG SRFVPNDLGL VRYLLRNMVE RKQSSVEITT MDVYQAEPWL LPHVSNRLFK  60
KKEWYYFVPK FRDKRSSRSV PRRGGSKAGF WRSGVRKEDI KDGNKIIGYK TPLTYHTIVN  120
GEKKKTDWRM TEYSLHGVGK GFQDWALCMI RDKTKTKVDK RINHVPQTQT QPRPHSQYQL  180
QPQPQVAAEN TNNILPNQLV HKEADFTGFA EELETMMLEG QEDREATEQQ QEEEIPQIHD  240
NNNNNVMMWN QQVQKEADLT SFADELETIM LEGQEDRDIT EQQQEEEIPM IPLGQIHXIG  300
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-141015320165NO APICAL MERISTEM PROTEIN
1ut4_B4e-141015320165NO APICAL MERISTEM PROTEIN
1ut7_A4e-141015320165NO APICAL MERISTEM PROTEIN
1ut7_B4e-141015320165NO APICAL MERISTEM PROTEIN
3swm_A5e-141015323168NAC domain-containing protein 19
3swm_B5e-141015323168NAC domain-containing protein 19
3swm_C5e-141015323168NAC domain-containing protein 19
3swm_D5e-141015323168NAC domain-containing protein 19
3swp_A5e-141015323168NAC domain-containing protein 19
3swp_B5e-141015323168NAC domain-containing protein 19
3swp_C5e-141015323168NAC domain-containing protein 19
3swp_D5e-141015323168NAC domain-containing protein 19
4dul_A4e-141015320165NAC domain-containing protein 19
4dul_B4e-141015320165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g004610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501303.10.0PREDICTED: NAC domain-containing protein 6-like
TrEMBLR0I9X61e-102R0I9X6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010501303.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.19e-34NAC domain containing protein 6