PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g003100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 312aa MW: 33421.9 Da PI: 6.5875 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.7e-09 | 164 | 208 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L Csa03g003100.1 164 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 208 99***********************55......9**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-14 | 157 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.802 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-14 | 161 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 164 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-10 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MANNNPHDNI SDPSPTDDFF EQILGLSNFS ASSGSGLSGI GGGLSAPPMM LQLGGSAGDE 60 GNHHNHNMGA IGGGPGPGPV GFHDHMFPLG LSLDQGKGHG FLKPEGVLPS GKRFQDDVVD 120 NRCSSIKPVY HGQPMSQPAP PMPHQQSTIR PRVRARRGQA TDPHSIAERL RRERIAERIR 180 ALQELVPTVN KTDRAAMIDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TEMPLSSSIE 240 DETQAVWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC IIPISLAMAI YHSQPPDTSS 300 SIVKPEMNPP P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 173 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g003100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF251692 | 0.0 | AF251692.2 Arabidopsis thaliana putative transcription factor BHLH7 mRNA, complete cds. | |||
GenBank | AY054469 | 0.0 | AY054469.1 Arabidopsis thaliana Unknown protein (At1g03040; F10O3.14) mRNA, complete cds. | |||
GenBank | AY114633 | 0.0 | AY114633.1 Arabidopsis thaliana unknown protein (At1g03040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481495.2 | 0.0 | PREDICTED: transcription factor bHLH7 | ||||
Swissprot | Q93Y00 | 1e-166 | BH007_ARATH; Transcription factor bHLH7 | ||||
TrEMBL | R0IIQ6 | 1e-178 | R0IIQ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010481495.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03040.1 | 1e-161 | bHLH family protein |