PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g002570.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 730aa MW: 83949.6 Da PI: 4.463

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g002570.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66	1.1e-20	7	131	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevl 93 ++F P+d l ++yL+++++++k +ik++++++ +Pw Lp+ ++ +e fF + +++ + g+ +nr+ ++ g+Wk+ g+++e++ Csa03g002570.1 7 LKFFPSDMTLADHYLRRRISTDKE---GFIKDIKLNEDHPWLLPHVNNNLFSEKEFFYNVKRTLKAGRTPNRKvlgqggINIGTWKSNGSKEEIV 98 79****************9993...56***********533333335545555556666799999976777777799******** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++g k+ L +yk + + + t W+m ey l Csa03g002570.1 99 DLNKVVIGHKTELSYYK--HGDLTATGWCMTEYWL 131 ************5..555569******87 PP
2	NAM	67.6	3.5e-21	181	311	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkdk 90 ++F Ptd lv +yL++++ + k +i+++++y+ ePw+Lp+ vk+ e+ w++F++r ++ ++ r+ g+W+++g ++ Csa03g002570.1 181 LKFFPTDLKLVEHYLCNRLITGKD---GFITDIKLYEDEPWRLPH-VKNdqfIERGWFYFVERTCESG--NKIIRTvsgrggSGGGTWNKSGLKT 269 79**************999984...45***********3.333123567999987765..4555542333336699***** PP NAM 91 evlskkgelvglkktLvfy...kg.rapkgektdWvmheyrl 128 ++l++++ ++g k+ +y +g + kge t W+m ey l Csa03g002570.1 270 AILDANDVVIGYKQEYSYYkhvRGqPKTKGEATGWCMTEYWL 311 ***************65534267899********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	26.6	3	149	IPR003441	NAC domain
Pfam	PF02365	6.3E-12	6	130	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-24	7	149	IPR003441	NAC domain
PROSITE profile	PS51005	29.931	177	328	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-26	178	328	IPR003441	NAC domain
Pfam	PF02365	2.1E-12	180	310	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MADPRDLKFF PSDMTLADHY LRRRISTDKE GFIKDIKLNE DHPWLLPHVN NNLFSEKEFF 60 YNVKRTLKAG RTPNRKVLGQ GGINIGTWKS NGSKEEIVDL NKVVIGHKTE LSYYKHGDLT 120 ATGWCMTEYW LASKKNEFQE TVLCYIRGKK KQVKNVSSYA SSDRAFAPRE DMITMVDPSH 180 LKFFPTDLKL VEHYLCNRLI TGKDGFITDI KLYEDEPWRL PHVKNDQFIE RGWFYFVERT 240 CESGNKIIRT VSGRGGSGGG TWNKSGLKTA ILDANDVVIG YKQEYSYYKH VRGQPKTKGE 300 ATGWCMTEYW LGSDENAAEV VLCNIRVKKD VDDQYQLQTT ETNNNIVEQP PLDNNTVSNA 360 LVTGDGGEGY DSETGQQNMD ADDYKFMFDT ELLDFVDQQQ PLMLSQDSIP PLGGKDLRST 420 KDQMEEYAKE LEIILDKDED DDDNDMVKQQ QQHPHIPLPL ESVTQQREQE RMIDRTFGFI 480 DQQQPLMLPN SIPSLGGQDL RSTMDQHMEE YAKELENILD KGEDDEDDRV TQQHQHPHIP 540 LPIQVQDSGN SLVITEDECV GRQDILNLDQ HMEDYAEELE NLLDKDEEED GVEPASQQQH 600 PQIPLPPQAR DSGNPLVIME DECVDQDIIY NLESVTQQQE QEKMVDTLGE MDWARFEMGN 660 LYFQDSYLAG FQEMSPWDNM LTNTNPFGLL FNTHGYEMKD VTNGVNQKSL GCVANCAMQE 720 QRRKRRKQW*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MADPRDLKFF PSDMTLADHY LRRRISTDKE GFIKDIKLNE DHPWLLPHVN NNLFSEKEFF  60
YNVKRTLKAG RTPNRKVLGQ GGINIGTWKS NGSKEEIVDL NKVVIGHKTE LSYYKHGDLT  120
ATGWCMTEYW LASKKNEFQE TVLCYIRGKK KQVKNVSSYA SSDRAFAPRE DMITMVDPSH  180
LKFFPTDLKL VEHYLCNRLI TGKDGFITDI KLYEDEPWRL PHVKNDQFIE RGWFYFVERT  240
CESGNKIIRT VSGRGGSGGG TWNKSGLKTA ILDANDVVIG YKQEYSYYKH VRGQPKTKGE  300
ATGWCMTEYW LGSDENAAEV VLCNIRVKKD VDDQYQLQTT ETNNNIVEQP PLDNNTVSNA  360
LVTGDGGEGY DSETGQQNMD ADDYKFMFDT ELLDFVDQQQ PLMLSQDSIP PLGGKDLRST  420
KDQMEEYAKE LEIILDKDED DDDNDMVKQQ QQHPHIPLPL ESVTQQREQE RMIDRTFGFI  480
DQQQPLMLPN SIPSLGGQDL RSTMDQHMEE YAKELENILD KGEDDEDDRV TQQHQHPHIP  540
LPIQVQDSGN SLVITEDECV GRQDILNLDQ HMEDYAEELE NLLDKDEEED GVEPASQQQH  600
PQIPLPPQAR DSGNPLVIME DECVDQDIIY NLESVTQQQE QEKMVDTLGE MDWARFEMGN  660
LYFQDSYLAG FQEMSPWDNM LTNTNPFGLL FNTHGYEMKD VTNGVNQKSL GCVANCAMQE  720
QRRKRRKQW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g002570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462533.1	0.0	PREDICTED: uncharacterized protein LOC104743115
STRING	XP_010480317.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20214	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	1e-21	NAC domain containing protein 6