PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g002250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 695aa    MW: 79001.6 Da    PI: 6.9048
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g002250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.73.3e-3491392128
             NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     p G+rF  t+ee+ ++yL+ k +e+++ ++++vi++v+i++++Pw+Lp+     v++++  wyfF + ++ky++g+r++r+t+sg+Wk+tg++ +
  Csa03g002250.1   9 PIGVRFCLTEEEIFDYYLRIKnLESNTSHVDKVISTVNICSSDPWHLPSmatiIVETTDLVWYFFGRIENKYNRGDRQSRKTQSGFWKKTGETMD 103
                     79*****************88355555788888***************5355544556669********************************** PP

             NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++k  +ge++g k++L+fy    + g k++Wvmhey++
  Csa03g002250.1 104 IKRKsgNGEKIGEKRVLMFY---LKGGLKSKWVMHEYHA 139
                     **99889999**********...577889********96 PP
2NAM1332.2e-413184472128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     p+GfrF+Ptdee+v++yL++k  +++ +++++vi++vdi++v+PwdLp k ++++++  wyfF  +++ky++g++++r+tksg+Wk+tgk+  ++
  Csa03g002250.1 318 PVGFRFRPTDEEIVDHYLRPKNLESDtCRVDKVISTVDICSVDPWDLPcKsRIRSRDGVWYFFGVKENKYNRGDQQRRTTKSGFWKKTGKTMCII 412
                     89*****************99655554999999***************6347777888************************************* PP

             NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +k   ++e++g k++Lvf    ++ g+k++Wvmhey++
  Csa03g002250.1 413 RKrrgNREKIGEKRVLVFK---HRGGSKSNWVMHEYHA 447
                     998888889*********7...77889*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-384159IPR003441NAC domain
PROSITE profilePS5100538.2498159IPR003441NAC domain
PfamPF023653.5E-189138IPR003441NAC domain
SuperFamilySSF1019414.45E-44313467IPR003441NAC domain
PROSITE profilePS5100543.092317467IPR003441NAC domain
PfamPF023655.9E-24318446IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MSLSRLVNPI GVRFCLTEEE IFDYYLRIKN LESNTSHVDK VISTVNICSS DPWHLPSMAT  60
IIVETTDLVW YFFGRIENKY NRGDRQSRKT QSGFWKKTGE TMDIKRKSGN GEKIGEKRVL  120
MFYLKGGLKS KWVMHEYHAT FFSPPNQMMT YTLCKVEFKG EKREIEESRS LYPAPMSNDN  180
IGGLMIKNPC QITGSPLDLD ALDWVMDNIL SPDFVGLAAD DDDEQSKGVY MEEYNRYRPK  240
KPLTGVFSDN SSDSDSVSPT TSSIQTWSTC DSFGSSNQII TDLLPESATS TVKETPVKKK  300
KTYDDDALGT EIATMMNPVG FRFRPTDEEI VDHYLRPKNL ESDTCRVDKV ISTVDICSVD  360
PWDLPCKSRI RSRDGVWYFF GVKENKYNRG DQQRRTTKSG FWKKTGKTMC IIRKRRGNRE  420
KIGEKRVLVF KHRGGSKSNW VMHEYHATPL SPPNQIMKYT LCKVEFKGEE SEISSSSIGS  480
EIENNHSLIP LMNNSGELSP RSEGSSYCQG IQNPSQLSGF LGVQQETQLQ DAVRRAINNI  540
STDDWNSLFN ADDDHSKIVS VQEDCSDYRP PKPLTGVFDD HSSDDNDTDS DSDSISATTN  600
SIETSSICDS DQIKTQQSPD STTIKLVSSD QEVSQAMGQG TVTRENEDRV KKKRASLIHR  660
MIQRLVKKFH QLSHENNKRD QRRHRFVLSK FVEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-21346412162NO APICAL MERISTEM PROTEIN
1ut4_B5e-21346412162NO APICAL MERISTEM PROTEIN
1ut7_A5e-21346412162NO APICAL MERISTEM PROTEIN
1ut7_B5e-21346412162NO APICAL MERISTEM PROTEIN
3swm_A5e-21346415165NAC domain-containing protein 19
3swm_B5e-21346415165NAC domain-containing protein 19
3swm_C5e-21346415165NAC domain-containing protein 19
3swm_D5e-21346415165NAC domain-containing protein 19
3swp_A5e-21346415165NAC domain-containing protein 19
3swp_B5e-21346415165NAC domain-containing protein 19
3swp_C5e-21346415165NAC domain-containing protein 19
3swp_D5e-21346415165NAC domain-containing protein 19
3ulx_A6e-21944516138Stress-induced transcription factor NAC1
4dul_A5e-21346412162NAC domain-containing protein 19
4dul_B5e-21346412162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g002250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480830.10.0PREDICTED: NAC domain-containing protein 4-like
SwissprotO819131e-135NAC4_ARATH; NAC domain-containing protein 4
TrEMBLR0I7D21e-145R0I7D2_9BRAS; Uncharacterized protein
STRINGXP_010480830.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.11e-120NAC domain containing protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]