PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g001940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 598aa    MW: 66569.8 Da    PI: 6.987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g001940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13440485454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  Csa03g001940.1 440 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 485
                     799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5149237IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-19439505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.38E-14439490No hitNo description
Gene3DG3DSA:4.10.280.103.5E-18440499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10440485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-16442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MNHIGGVVWN EDDKAIIASL LGKRALDYLL SNSVPNANLL MTVGSDDNLQ NKLSDLVERP  60
NSCNFSWNYA IFWQISRSKS GDLVLCWGDG SCREPKQGEK SDIVRILSMG REEETYQTMR  120
KRVLQKLHAM FGESEEDNCA LGLDRVTDTE MFLLSSMYFS FPRGEGGPGK CFASGKPLWL  180
SDVVNSGSDY CVRSFLAKSA GIQTIVLVPT DIGVVELGST SCLPESEESM LSIRSLFSST  240
LPPVRTLPAV ALPVVVAEKI DDNRTVTGSK IFGKDLHSSG FLHQHHQQQP HQQQQQQQQH  300
RQFREKLTVR KMDDRAPKRL DAYPNNNGNR FMFANPGSNN TLISPTWVQP ENYIRTNSVK  360
EVPSKDDFKF LPLQQASQRL LPPAQMQIDF SAASSRASEN NSDGEGGPEW ADTVGADESG  420
NNRPRKRGRR PANGRAEALN HVEAERQRRE KLNQRFYALR SVVPNISKMD KASLLGDAVS  480
YINELHAKLK VMEAEKERLG YSSNPPISLD SDINVQTSGE DVTVRINCPL ESHPASRIFH  540
AFEESKVEVI NSNLEVSQDT VLHTFVVKSQ ELTKEKLISA LSREQSSSVQ SRTSSGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26434496264Transcription factor MYC2
5gnj_B2e-26434496264Transcription factor MYC2
5gnj_E2e-26434496264Transcription factor MYC2
5gnj_F2e-26434496264Transcription factor MYC2
5gnj_G2e-26434496264Transcription factor MYC2
5gnj_I2e-26434496264Transcription factor MYC2
5gnj_M2e-26434496264Transcription factor MYC2
5gnj_N2e-26434496264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g001940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0236280.0AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence.
GenBankAF2516980.0AF251698.1 Arabidopsis thaliana putative transcription factor BHLH13 mRNA, complete cds.
GenBankAY0790120.0AY079012.1 Arabidopsis thaliana At1g01260/F6F3_25 mRNA, complete cds.
GenBankAY1207520.0AY120752.1 Arabidopsis thaliana transcription factor MYC7E, putative (At1g01260) mRNA, complete cds.
GenBankBT0045170.0BT004517.1 Arabidopsis thaliana At1g01260/F6F3_25 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480459.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLR0IMU80.0R0IMU8_9BRAS; Uncharacterized protein
STRINGXP_010480459.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]