PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g001150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 310aa    MW: 34365.4 Da    PI: 9.0836
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g001150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP27.11.1e-08189211123
                     --SSTT-----TT--HHHHHTT- CS
             SBP   1 lCqvegCeadlseakeyhrrhkv 23 
                     +Cq+egC+adls+ak+yhrrhkv
  Csa03g001150.1 189 RCQAEGCNADLSHAKHYHRRHKV 211
                     6*********************8 PP
2SBP392.2e-122122414978
                     EEETTT--SS--S-STTTT-------S--- CS
             SBP  49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     fh lsefD++krsCr+rLa+hn+rrrk ++
  Csa03g001150.1 212 FHLLSEFDNGKRSCRKRLADHNRRRRKCHQ 241
                     9*************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-9186211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114116.879187239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-19188242IPR004333Transcription factor, SBP-box
PfamPF031105.8E-7212238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MLDYEWENPS SIVLSGDERN HPDSDPTRAL SIFDPSNYND HRHITISPPL LSSAFSTSNH  60
HHHHHLTTTA VVYGQNQQNQ QFHHQYSFYD PRTTTSPYVA SDPIYHPHSS SPALYSYDHT  120
GPAGSGGSGS SYNFLIPKTE VDFTSNRIGL NLGGRTYFSA ADDDFVSRLY RRSRPGESGM  180
GNSLLSTPRC QAEGCNADLS HAKHYHRRHK VFHLLSEFDN GKRSCRKRLA DHNRRRRKCH  240
QSTSAAHDSA GKPTPKSPND SGMKSSPSPS KTPTTISLEC FRQRQFQTTA NSSSTSASSS  300
SNSMFFSSG*
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g001150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116413e-89AJ011641.1 Arabidopsis thaliana (ecotype Columbia) spl8 gene, exons 1-3.
GenBankCP0026843e-89CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899593e-89U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096728.10.0PREDICTED: squamosa promoter-binding-like protein 8
SwissprotQ8GXL31e-134SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLD7KP461e-144D7KP46_ARALL; Uncharacterized protein
STRINGXP_010479450.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70102743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-127squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]