PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa03598s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 208aa MW: 23874.9 Da PI: 6.1734 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.9 | 5.6e-16 | 1 | 39 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Csa03598s010.1 1 MFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 39 69**********************************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-15 | 1 | 48 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.511 | 1 | 41 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-13 | 1 | 39 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0021 | 1 | 45 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.55E-13 | 1 | 45 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.64E-12 | 2 | 41 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 16 | 39 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 12.621 | 163 | 208 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT QLERHENALL RQENDKLRAE 60 NMSIREAMRN PICTNCGGPA MLGDVSLEEH HLRIENARLK DELDRVCNLT GKFLGHHHHH 120 YNSSLELAVG TNNGGNFAFP PDFGGGACLP PPQQQQQQTG INGIDQKSVL LELALNAMDE 180 LVKLAHSEEP LWVKSLDGER DELNQDEY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa03598s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK226968 | 0.0 | AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10. | |||
GenBank | ATU85254 | 0.0 | U85254.1 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010419627.1 | 1e-150 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Refseq | XP_010419628.1 | 1e-150 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Refseq | XP_010456250.1 | 1e-150 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Refseq | XP_010497426.2 | 1e-153 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like, partial | ||||
Refseq | XP_019090649.1 | 1e-150 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Swissprot | Q0WV12 | 1e-127 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | R0H8W0 | 1e-138 | R0H8W0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010419627.1 | 1e-149 | (Camelina sativa) | ||||
STRING | XP_010456250.1 | 1e-149 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17003 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.2 | 1e-125 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|