PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g076040.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 551aa MW: 58939.9 Da PI: 9.5906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g076040.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Csa02g076040.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.7	0.0008	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Csa02g076040.1 137 WKCEKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.16E-6	60	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	61	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	89	102	132	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.1E-4	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.16E-6	132	157	No hit	No description
SMART	SM00355	140	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MPVDLDNSST VSGDASVSST GNQNQTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKK VYVCPVAGCV HHEPSRALGD 120 LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESAKNHTQSK KLYPETVTRK NPEPDQKSPP VVESPPSLQP SSSPPSVAIA 240 PAPAISVESE PAKVISSSVL PIQNSPESPE NNPPEVIIEE ASRTIGFNFI CFLNCFPKFI 300 HTIFLHRTNL SLSLDEPVFI QTNNTTRSAT FPNSSSSSTG NVSYRIAPKS CPNGFHGIRR 360 VVASRVRHSF NHFFIDGTQQ SSSSIEPISL CLSTNPSLFR PTIQDPPHFL TPLPPQPAMS 420 ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT SSSMELSNHD ALSLAPGLGL GLPCSSGGSG 480 SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNPGGGL SALLTSIGGS GKIDVFGSGE 540 FSGKDIGRSS *

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MPVDLDNSST VSGDASVSST GNQNQTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKK VYVCPVAGCV HHEPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESAKNHTQSK KLYPETVTRK NPEPDQKSPP VVESPPSLQP SSSPPSVAIA  240
PAPAISVESE PAKVISSSVL PIQNSPESPE NNPPEVIIEE ASRTIGFNFI CFLNCFPKFI  300
HTIFLHRTNL SLSLDEPVFI QTNNTTRSAT FPNSSSSSTG NVSYRIAPKS CPNGFHGIRR  360
VVASRVRHSF NHFFIDGTQQ SSSSIEPISL CLSTNPSLFR PTIQDPPHFL TPLPPQPAMS  420
ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT SSSMELSNHD ALSLAPGLGL GLPCSSGGSG  480
SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNPGGGL SALLTSIGGS GKIDVFGSGE  540
FSGKDIGRSS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	133	199	3	69	Zinc finger protein JACKDAW
5b3h_F	1e-34	133	199	3	69	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	99	KLRQRSSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g076040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099859	0.0	AY099859.1 Arabidopsis thaliana zinc finger protein (At5g66730) mRNA, complete cds.
GenBank	BT000310	0.0	BT000310.1 Arabidopsis thaliana zinc finger protein (At5g66730) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280348.1	0.0	protein indeterminate-domain 1
Swissprot	Q9LVQ7	0.0	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	R0EWK5	0.0	R0EWK5_9BRAS; Uncharacterized protein
STRING	Cagra.2007s0026.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-137	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]