PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g075740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 322aa    MW: 37004.7 Da    PI: 5.3644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g075740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.7e-1910105197
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ffkv+     ++s+ lv+p  f++   g+ k+ +k+  l de g+ W+v+   + +++r  ++++kGW++Fv ++ L+ gDf+vF++dg+s+f  
  Csa02g075740.1  10 FFKVF--LPEFSSHELVIPPAFIDLLlGLGKPLPKEAFLLDEIGQLWRVETETEDTDERfcVWFKKGWESFVTDQSLEFGDFLVFRYDGDSRF-- 100
                     88999..889999**********666*88899*******************98888888899***************************9999.. PP

                     EEEEE CS
              B3  93 vvkvf 97 
                      v+vf
  Csa02g075740.1 101 SVTVF 105
                     77776 PP
2B338.32.5e-12215288985
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                      +++ + l +p +f++++g++   + +l l de+g++W +k+  ++++++  + ++ W  F+k+++L+ +  ++F+++
  Csa02g075740.1 215 TSSSYQKLEIPTTFLKSNGIE--LEEELELCDEDGKKWPLKV--ENHGRGqRFSSATWLAFCKSHKLRKNHKFLFEFI 288
                     455566789*********877..5569***************..4444443456789*******************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.4518108IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-199113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-199108IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1910108IPR003340B3 DNA binding domain
CDDcd100171.96E-1410105No hitNo description
PfamPF023629.6E-1810105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-17202288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-15203288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.773207306IPR003340B3 DNA binding domain
CDDcd100179.36E-8208292No hitNo description
SMARTSM010191.1E-10210306IPR003340B3 DNA binding domain
PfamPF023626.7E-10214288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVETGKDLEF FKVFLPEFSS HELVIPPAFI DLLLGLGKPL PKEAFLLDEI GQLWRVETET  60
EDTDERFCVW FKKGWESFVT DQSLEFGDFL VFRYDGDSRF SVTVFAQDGI KRDVGGVTTT  120
EGTRVSVDNE PVDDTFTKPE SRKDCGNKRK REHDSINDKP DQYESTSKTK PEHREKIQKT  180
VNRAGDPCDI SSFPEDGAEE SVYKPKNPHF LRNITSSSYQ KLEIPTTFLK SNGIELEEEL  240
ELCDEDGKKW PLKVENHGRG QRFSSATWLA FCKSHKLRKN HKFLFEFIIP RSGRCNEIQV  300
RLVSERLPTT LTTNKYQVLA M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g075740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478635.10.0PREDICTED: putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-157Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLD7MLD41e-164D7MLD4_ARALL; Transcriptional factor B3 family protein
STRINGXP_010478635.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-133B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]