PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g073300.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 234aa    MW: 26514.3 Da    PI: 5.2581
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g073300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-33481631128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdLp k+ +e ++wyf+s++         + r+t++gyW + g d++++++
  Csa02g073300.1  48 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QDRVTSNGYWGSMGLDEPIYTS 133
                     79*************************999.99***************87778899*****9974........5799****************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk L+fy g++    +t+W+m+ey+l
  Csa02g073300.1 134 sTHKKVGIKKYLTFYLGDS----QTNWIMQEYSL 163
                     77888**********7654....68*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-4435201IPR003441NAC domain
PROSITE profilePS5100541.61648201IPR003441NAC domain
PfamPF023651.6E-2149163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
LLYLLYIPQS LSHTSSGSTS SSLYNLLLHT HTHTHTHATT YISSSMDLPP GFRFFPTDEE  60
LVVHFLHRKA SLLPCHPDVI PDLDLYPYDP WDLPGKALGE GRQWYFYSRK TQDRVTSNGY  120
WGSMGLDEPI YTSSTHKKVG IKKYLTFYLG DSQTNWIMQE YSLPDSSSSS SRSSKRSSRA  180
SSSSSHKPDY SKWVVCRVYE QNCSEEEDDD GTELSCLDEV FLSLDDLDEV SLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-354420713171NO APICAL MERISTEM PROTEIN
1ut4_B2e-354420713171NO APICAL MERISTEM PROTEIN
1ut7_A2e-354420713171NO APICAL MERISTEM PROTEIN
1ut7_B2e-354420713171NO APICAL MERISTEM PROTEIN
3swm_A3e-354420716174NAC domain-containing protein 19
3swm_B3e-354420716174NAC domain-containing protein 19
3swm_C3e-354420716174NAC domain-containing protein 19
3swm_D3e-354420716174NAC domain-containing protein 19
3swp_A3e-354420716174NAC domain-containing protein 19
3swp_B3e-354420716174NAC domain-containing protein 19
3swp_C3e-354420716174NAC domain-containing protein 19
3swp_D3e-354420716174NAC domain-containing protein 19
4dul_A2e-354420713171NAC domain-containing protein 19
4dul_B2e-354420713171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g073300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187830.0AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461940.11e-170PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK61e-119NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0D3E2631e-122A0A0D3E263_BRAOL; Uncharacterized protein
STRINGXP_010461940.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-100xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]