PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g071710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 449aa    MW: 50510.6 Da    PI: 5.7201
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g071710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.84.1e-14110132426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C++++rtG CkyG++CkF+H+
  Csa02g071710.1 110 EDCSYYMRTGSCKYGSSCKFNHP 132
                     89********************9 PP
2zf-CCCH314.4e-10159180526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++++rtG CkyG++C+F+H 
  Csa02g071710.1 159 ECKYYFRTGGCKYGESCRFSHM 180
                     6********************6 PP
3zf-CCCH38.81.5e-12202226226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+f++r+G Ck+G+ CkF+H+
  Csa02g071710.1 202 GEKECPFYMRNGSCKFGSDCKFNHP 226
                     7899********************9 PP
4zf-CCCH19.81.4e-06349374227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C ++++tG Ck+  +Ck++H++
  Csa02g071710.1 349 DQPECTYYLKTGDCKFKYKCKYHHPK 374
                     689*********************96 PP
5zf-CCCH32.91.1e-10395419226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++r+G+Ck+G+ C+F H+
  Csa02g071710.1 395 DQSMCTHYSRYGICKFGPACRFDHS 419
                     5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.06E-6104134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356106134IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7106133IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-11110132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6112131IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4154181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244154182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6159183IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7159180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-6160182IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6200227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286200228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6202227IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10202226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4206225IPR000571Zinc finger, CCCH-type
SMARTSM003560.079347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112347375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5351377IPR000571Zinc finger, CCCH-type
PfamPF146080.45353373No hitNo description
SMARTSM003560.019393420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906393421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6394421IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5397419IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7399419IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MNKPEEISDP DPKQPSRSSS DEVTVTVADR DRSDQNQGTE ELNDQFRNVG LDDDDSANER  60
SVPISEGNVE TESRALGSDQ KEEEEEEERR ERENNVEKRM IVYPVRPDAE DCSYYMRTGS  120
CKYGSSCKFN HPLRRRLQIG REKVREREED VDNLKLMMEC KYYFRTGGCK YGESCRFSHM  180
KEQTSLASRP ELNFLGLPIR PGEKECPFYM RNGSCKFGSD CKFNHPDPTA IGGVDSPMFR  240
GNNGGSVGSF SPKAPLPQVS STSWSSSRHM NGTGTAPFIP AMFPQNRGVS SPQASEWNGY  300
QASSPYPPER SVLPPSTYSM NINNSIAETS SFSQYQQQSS VEEFPERPDQ PECTYYLKTG  360
DCKFKYKCKY HHPKNRLPKQ APSSFNDKGL PLRPDQSMCT HYSRYGICKF GPACRFDHSI  420
PPTFSSSSSL TVEGPQAGAN GNEDDSWH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g071710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460041.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLR0F1G10.0R0F1G1_9BRAS; Uncharacterized protein
STRINGXP_010460041.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein