PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g067410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 249aa MW: 28336.3 Da PI: 10.3778 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.6 | 9.8e-31 | 2 | 58 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +v Y+eClkNhA+slGgha+DGCgEf+ ++++ +++ +l+C ACgCHRnFHRr+++ Csa02g067410.1 2 AVLYNECLKNHAVSLGGHALDGCGEFIRKSTTIlTDTPSLRCDACGCHRNFHRRSPS 58 589**************************99999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-30 | 1 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.5E-25 | 3 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-30 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.958 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 102 | 167 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.09E-14 | 106 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-28 | 111 | 167 | IPR006455 | Homeodomain, ZF-HD class |
SuperFamily | SSF46689 | 7.53E-15 | 168 | 230 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 168 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-29 | 173 | 230 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAVLYNECLK NHAVSLGGHA LDGCGEFIRK STTILTDTPS LRCDACGCHR NFHRRSPSDV 60 FSHCWSPPLQ PLASTPHLLL SLSSGFSGPS NQEDKNKFTV AKEDRSAMMM KKRKRTKLTA 120 DQKEKMRGFA ERAGWKINGS DEKWVKEFCS EVGIERQVLK VWIHNNNTSP SXKKRKRTKL 180 TADQKEKMRG FAERAGWKIN GSDEKWVKEF CSEVGIERQV LKVWIHNNKY FPNVKNRDTT 240 SSMSLKLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-18 | 112 | 229 | 18 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | KKRKRT |
2 | 172 | 179 | KKRKRTKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g067410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011483 | 1e-130 | AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9. | |||
GenBank | CP002688 | 1e-130 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456474.1 | 1e-115 | PREDICTED: zinc-finger homeodomain protein 12-like | ||||
Swissprot | Q9FKJ9 | 3e-95 | ZHD12_ARATH; Zinc-finger homeodomain protein 12 | ||||
TrEMBL | A0A178UPU6 | 5e-93 | A0A178UPU6_ARATH; ZHD12 | ||||
STRING | XP_010456467.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 5e-83 | homeobox protein 26 |