PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g065600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 21371.6 Da PI: 7.5052 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.2 | 2.3e-16 | 14 | 106 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv + + l +p +f++ k+ +kt+t+++ sg sWe+ + rk+sg +v +GWk +k+ +Lk gDf+ F++dg++ f Csa02g065600.1 14 FFKVY--LPDESGDDLKIPISFTSFVP--KPFPKTVTVRSISGSSWELAF--RKCSGDvesFVVVDGWKLIAKDENLKGGDFLEFEFDGSRHF-- 100 67777..44555667*******96665..56999****************..888887778*************************9997777.. PP EEEEE- CS B3 93 vvkvfr 98 ++ +f+ Csa02g065600.1 101 NFCIFE 106 777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.51E-19 | 7 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-17 | 7 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.351 | 12 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.70E-14 | 12 | 105 | No hit | No description |
SMART | SM01019 | 6.8E-15 | 14 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-14 | 14 | 106 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.22E-6 | 108 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MNKGNSSDDC LPKFFKVYLP DESGDDLKIP ISFTSFVPKP FPKTVTVRSI SGSSWELAFR 60 KCSGDVESFV VVDGWKLIAK DENLKGGDFL EFEFDGSRHF NFCIFEPQVI KDYGLHFPES 120 ITIVDPLAKK FGILEKHIKI QTNGSVFVKG FGSIIRRNNM KTTDKIICEI KKTGDDNLVH 180 TMKIHILSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-13 | 4 | 105 | 1 | 99 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g065600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455999.1 | 3e-71 | PREDICTED: B3 domain-containing protein At5g60130-like | ||||
Swissprot | Q9LVG1 | 7e-48 | Y5013_ARATH; B3 domain-containing protein At5g60130 | ||||
TrEMBL | D7MT68 | 1e-86 | D7MT68_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802655.1 | 2e-87 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60130.2 | 1e-50 | B3 family protein |
Publications ? help Back to Top | |||
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