PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g064950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 309aa    MW: 36248.4 Da    PI: 5.0289
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g064950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.61e-18121623128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra.....tksgyWka 85 
                      G++F+Pt+ e+++ yL + ++++++e   +i   d+y  ePw L++ +++   +e+ewy+ +++ + ++     gk ++r+     +++g W+a
  Csa02g064950.1  12 EGLHFDPTEPEVINSYLIPMLRDEPMED--FIVVKDVYAKEPWLLDH-INHpflKEDEWYYVTPKTQISKekvgCGKYSKRKiigdgIDRGNWNA 103
                     599**********************766..788889*********83.333345889*****999876653333566777755666666999*** PP

             NAM  86 tgkdkevlskkgelvglkktLvfy.........kgrapkge.............ktdWvmheyrl 128
                      gk+  + + +g+++g+k+ ++++         +      +             + +W+m+e+rl
  Csa02g064950.1 104 NGKKDIIDEDTGKVIGVKQNFTYHsasknknkkQ------KrgdvgsvsvdvprNESWIMDEFRL 162
                     ***98888889*************6654432220......1223444555555577888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.50210182IPR003441NAC domain
SuperFamilySSF1019413.01E-2412182IPR003441NAC domain
PfamPF023657.0E-1213162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTTENDYYEE DEGLHFDPTE PEVINSYLIP MLRDEPMEDF IVVKDVYAKE PWLLDHINHP  60
FLKEDEWYYV TPKTQISKEK VGCGKYSKRK IIGDGIDRGN WNANGKKDII DEDTGKVIGV  120
KQNFTYHSAS KNKNKKQKRG DVGSVSVDVP RNESWIMDEF RLPTSKDNDT FQGRVICKIH  180
KKKWSEKEKK KEKKKEEKEK EKENDHHEED KLDQELVVPC KIHKKKWSEK EKKKEKDSYE  240
EASTSTNHYQ HDETSSSSFW EQQKKEALGG EKVDEQVQGM ETETFEDMIE ELLGSENICD  300
QDLFSIPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g064950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485233.11e-165PREDICTED: NAC domain-containing protein 35-like
TrEMBLR0GU201e-76R0GU20_9BRAS; Uncharacterized protein
STRINGXP_010485233.11e-164(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.15e-13NAC domain containing protein 88