PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g064730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 308aa    MW: 36041.3 Da    PI: 5.8736
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g064730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.98.5e-19121623128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra.....tksgyWka 85 
                      G++F+Pt+ e+++ yL + ++++++e   +i   d+y  ePw L++ +++   +e+ewy+ +++ + ++     gk ++r+     +++g W+a
  Csa02g064730.1  12 EGLHFDPTEPEVINSYLIPMLRDEPMED--FIVVKDVYAKEPWLLDH-INHpflKEDEWYYVTPKTQISKekigCGKYSKRKiigdgIDRGNWNA 103
                     599**********************766..788889*********83.333345889******99876663343566777755666666999*** PP

             NAM  86 tgkdkevlskkgelvglkktLvfy.........kgrapkge.............ktdWvmheyrl 128
                      gk+  + +++g+++g+k+ ++++         +      +             + +W+m+e+rl
  Csa02g064730.1 104 NGKKDIIDEETGKVIGVKQNFTYHsasknknkkQ------KrgdvgsvsvdvprNESWIMDEFRL 162
                     ***9999999**************6654432220......1223444555555577888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.5210182IPR003441NAC domain
SuperFamilySSF1019412.75E-2412182IPR003441NAC domain
PfamPF023656.1E-1213162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTTENDYYEE DEGLHFDPTE PEVINSYLIP MLRDEPMEDF IVVKDVYAKE PWLLDHINHP  60
FLKEDEWYYV TPKTQISKEK IGCGKYSKRK IIGDGIDRGN WNANGKKDII DEETGKVIGV  120
KQNFTYHSAS KNKNKKQKRG DVGSVSVDVP RNESWIMDEF RLPTSKDNDT FQGRVICKIH  180
KKKWSEKEKK KEKKKEEKKK EKENDHHVED KLDQELVVPC KIHKKRNAKK KKEKDSYEEA  240
STSTNHYQHD ESSSSSSSFW EQQKKEALGG EKVDEQVKAM ETERYEDWIE ELLGSENICD  300
QDLFSIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224232KRNAKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g064730.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477289.11e-172PREDICTED: NAC domain-containing protein 35-like
TrEMBLR0GU203e-78R0GU20_9BRAS; Uncharacterized protein
STRINGXP_010477289.11e-171(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.15e-13NAC domain containing protein 88