PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g062870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 275aa    MW: 31361.2 Da    PI: 7.9417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g062870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.4e-19133222198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+ ++ ++  e+++++lede+g+++e  +   +k+++  l++GWk+F+ +++L++gD ++F+l++ ++f  ++ 
  Csa02g062870.1 133 FVKSMVRSHVYSCFWLGLPSRFCVDNFSE--ETIDVVLEDEEGEEYEAVY--IGKRSG--LSGGWKKFALDHKLDDGDALLFELVEPNRF--KIY 219
                     89************************866..6779***************..555544..9**********************9987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     vfr
  Csa02g062870.1 220 VFR 222
                     887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.88E-22126224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-20127223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-19131222No hitNo description
SMARTSM010191.4E-25133224IPR003340B3 DNA binding domain
PfamPF023622.7E-17133223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253133224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAYEEARKLR LQENHKRFQE LGISQISKAL LTQIPKKTLQ QRNPKPIDKA LVATAEPRRS  60
SRVRTLVTSY RDDVDVDTGR TLDLRRSRRN SSWASYIARP EDECKFASYE EKVGALNAAE  120
EFQSCLESPY PSFVKSMVRS HVYSCFWLGL PSRFCVDNFS EETIDVVLED EEGEEYEAVY  180
IGKRSGLSGG WKKFALDHKL DDGDALLFEL VEPNRFKIYV FRGNENAHLT SAGKRGRVKQ  240
GEEEDKDVED SGDEGYISRT TKRSSARLLS KRKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g062870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192286e-41AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBankCP0026886e-41CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453458.10.0PREDICTED: putative B3 domain-containing protein At5g58280
SwissprotQ9FHB21e-133Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLR0GRK81e-160R0GRK8_9BRAS; Uncharacterized protein
STRINGXP_010453450.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-122B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]