PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g059180.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 704aa    MW: 76011.6 Da    PI: 6.0703
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g059180.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31278335260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Csa02g059180.2 278 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 335
                     8****************************************.***************85 PP
2WRKY103.89.5e-33498556159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  Csa02g059180.2 498 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 556
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-28273336IPR003657WRKY domain
SuperFamilySSF1182905.1E-25275336IPR003657WRKY domain
SMARTSM007741.6E-34277335IPR003657WRKY domain
PROSITE profilePS5081123.25278336IPR003657WRKY domain
PfamPF031066.0E-24278333IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36483558IPR003657WRKY domain
SuperFamilySSF1182901.7E-28490558IPR003657WRKY domain
PROSITE profilePS5081138.136493558IPR003657WRKY domain
SMARTSM007741.8E-37498557IPR003657WRKY domain
PfamPF031069.1E-25499556IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MVGFDENVAV MGEWVPRSPS PGTLFSSVIG EGNNSSKPVL ERELSLNHGQ VMGVEEDTTT  60
VNHNNDSSSL TYVSRGGGLC ERIAARAGFN APRLNTESIR SNTNFSIDSG RRSPCLTISS  120
PGLSPATLLE SPVFLTNPMA QPSPTTGKFP FLPGFNSNAL SSDNAKDEFF DDIGASFTFQ  180
SVSRSSSSFF QGTTEMMSVD YGNYNNRSSH QPAEEDVKPG SLNIESSNLY GVQTDPSGQN  240
KSSDATTTNT GLETVDHQEE EEDQRRGGDS MVGGAPAEDG YNWRKYGQKL VKGSEYPRSY  300
YKCTNPNCQV KKKVERSREG HITEIIYKGA HNHSKPLPNR RSGMQTDGTE QVEQQQQQQQ  360
QQQQRDSAGT WVSCNNTQQQ GGSNVNNVEE GTTGFEYGNQ SGSIQAQTGG QYESNDAVVV  420
VDTSSTFSND EDEDDRGTHG SVSLGCDGGG GRSGEGEGEE SESKRRKLEA YAAEMSGATR  480
AIREPRVVVQ TTSDVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTAPGCT VRKHVERASH  540
DLKSVITTYE GKHNHDVPAA RNSSHGGGGT SNGSSGGSAA QSHHYHNGHH HSEQPRGRFE  600
RQVTATNQSP YGRGPFSFQP HLGPPSGYAF GLGQTGLANL SIPGLAFGQG KMPGMPHPYM  660
TQPSVGNMSE AMMQRGGMEP KAEPVSDSGQ SVYNQIMSRL PQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37278559878Probable WRKY transcription factor 4
2lex_A4e-37278559878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g059180.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183080.0AF418308.1 Arabidopsis thaliana WRKY transcription factor 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450884.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLR0EV690.0R0EV69_9BRAS; Uncharacterized protein
STRINGXP_010450884.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]