PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g054780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TALE | ||||||||
Protein Properties | Length: 618aa MW: 70190 Da PI: 7.0566 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.9e-09 | 408 | 445 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Csa02g054780.1 408 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 445 554459******************************88 PP | |||||||
2 | BELL | 105.1 | 4.9e-34 | 266 | 337 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLlsllee+++rY +y+eq+++ ++sFea++g+g+a++Yt+lA++a+SrhFrcLkd +++q+ Csa02g054780.1 266 EFMELQKRKAKLLSLLEELKRRYGHYREQMRVAAASFEAAVGVGAAEVYTALASRAMSRHFRCLKDGLVGQV 337 679*****************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 1.3E-42 | 192 | 333 | IPR006563 | POX domain |
SMART | SM00574 | 2.3E-68 | 198 | 335 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 386 | 449 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.01E-10 | 389 | 450 | No hit | No description |
SMART | SM00389 | 5.6E-9 | 389 | 453 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.12E-17 | 390 | 457 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-28 | 392 | 456 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.2E-18 | 406 | 445 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MARDQFYGHN HHHHQEQQHQ MINQIQGFDE TNQNPTDHHH YGHQIFGSNS NMGMMIDFSK 60 QQQIRMTSGP DHHHHHHHDQ TSGGTDQNQL LEDSSSTMRL CNVNNDFPSE VNDERPPQRP 120 SQGLSLSLSS SNPTSISLQP FELRTQQQQQ GYSGKSTHHQ NLQHSQMMMM MMNSHHQNNN 180 HQHHNHQHQF QIGSSKYLSP AQELLSEFCS LGVKESDEEV MMMKHKKKQK GKQQEEWDTS 240 HNNNDQHDQS ATTSSKKHVP PLHSLEFMEL QKRKAKLLSL LEELKRRYGH YREQMRVAAA 300 SFEAAVGVGA AEVYTALASR AMSRHFRCLK DGLVGQVQAT SQALGEREED NRAVSIAARG 360 ETPRLRLLDQ ALRQQKSYRQ MTLVDAHPWR PQRGLPERAV TTLRAWLFEH FLHPYPSDVD 420 KHILARQTGL SRSQVSNWFI NARVRLWKPM IEEMYCEETR GEQIMEITTN PMMIDTKPDP 480 NQIIRVEPES LSSIVTNPTS KTGLKAHSSN QHATTPYGSN FDFSLYGNQA VTYAGEGGPR 540 GDVSLTLGLQ QRNDGNGGVS LALSPVTAQG GQLYYGSRDH IDQEGPVQYS ASMLDDDQVQ 600 NLPYRNLMGA QLLHDIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g054780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU39944 | 0.0 | U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds. | |||
GenBank | AY049237 | 0.0 | AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447491.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | D7MIV5 | 0.0 | D7MIV5_ARALL; Uncharacterized protein | ||||
STRING | XP_010447491.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Publications ? help Back to Top | |||
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