PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g053450.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 343aa MW: 38387.4 Da PI: 5.4206

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g053450.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	98.7	5.5e-31	100	200	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkifel 91 lf r++se+D++ lL +idf+aktg +p++++dafye+vkks+sf++sk+qlv+K+r+L++Kf +k k + ++++++f k dq +f+l Csa02g053450.1 100 LFARIFSEDDDVFLLHRIIDFTAKTG-NPTENMDAFYEYVKKSLSFDASKDQLVTKVRNLRRKFDEKILKslekgITEEEQIVFPKVFDQTCFDL 193 799*********************.**********************************99877777789999************ PP DUF573 92 skkiWgs 98 s+kiWg+ Csa02g053450.1 194 SRKIWGT 200 ***95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.6E-25	101	199	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAPKQPEKIE NPPVASSSEE ESGSESGSSS SEESDSSSDD VVVSKHSGSK TTTTPTHVET 60 LPESSKAKAK RPLEETEEGS KKKMKTSEDL KSDEKPKQNL FARIFSEDDD VFLLHRIIDF 120 TAKTGNPTEN MDAFYEYVKK SLSFDASKDQ LVTKVRNLRR KFDEKILKSL EKGITEEEQI 180 VFPKVFDQTC FDLSRKIWGT DGILPCKSKK VRQEQLEGRI KDEENEKPQR HVITPSLSSA 240 LEIFSLYKSV NPNSFLDEVA WIACWDKVKD GPKKLVLEEK MKKIKSVDEE LCLMKIDVLA 300 DASKTMFKQD GGSTSVGCCV FAPSVGYLTG YYKTPLSSFF VN*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAPKQPEKIE NPPVASSSEE ESGSESGSSS SEESDSSSDD VVVSKHSGSK TTTTPTHVET  60
LPESSKAKAK RPLEETEEGS KKKMKTSEDL KSDEKPKQNL FARIFSEDDD VFLLHRIIDF  120
TAKTGNPTEN MDAFYEYVKK SLSFDASKDQ LVTKVRNLRR KFDEKILKSL EKGITEEEQI  180
VFPKVFDQTC FDLSRKIWGT DGILPCKSKK VRQEQLEGRI KDEENEKPQR HVITPSLSSA  240
LEIFSLYKSV NPNSFLDEVA WIACWDKVKD GPKKLVLEEK MKKIKSVDEE LCLMKIDVLA  300
DASKTMFKQD GGSTSVGCCV FAPSVGYLTG YYKTPLSSFF VN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g053450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010474628.1	0.0	PREDICTED: probable transcription factor At4g01260
Swissprot	O04608	2e-82	STKLR_ARATH; Probable transcription factor At4g01260
TrEMBL	R0G095	2e-96	R0G095_9BRAS; Uncharacterized protein
STRING	XP_010474628.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19132	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01260.1	4e-73	DNA-binding storekeeper protein-related transcriptional regulator