PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g049610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 324aa    MW: 35974.5 Da    PI: 4.1617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g049610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-2087137155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  Csa02g049610.1  87 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 137
                     59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.92E-3487144No hitNo description
SMARTSM003801.7E-3988151IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2188146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-3088145IPR001471AP2/ERF domain
PROSITE profilePS5103223.77588145IPR001471AP2/ERF domain
PfamPF008473.8E-1288137IPR001471AP2/ERF domain
PRINTSPR003672.2E-1089100IPR001471AP2/ERF domain
PRINTSPR003672.2E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNSSLRKVSI CFTDPDATDS SSDEDEQDFL FPRRRVKRFV NEITVEPACN NTATTSLKDK  60
KRLSSSADES QSPAKRPLKA SVAGQTKKFR GVRQRPWGKW AAEIRDPEQR RRIWLGTFET  120
AEEAAVVYDN AAIRLRGPDA LTNFSIPPQE EEQEEEPEPV IDTKPEINIT TTTTTTTSCS  180
ESTEDFQHLS SPSSVLNLQS EEVQQIQQPF KSAKPEPGIS DAPWWHTGFG TGSGETDDSF  240
PLDTPFLDNY FNESPPEMSI FDQTMGGMGH QVFSQNDDLF GDMFLDGQSL NIGDELMTSS  300
SIKDIGSMFS DFDDSLISDL LVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2287146161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g049610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474103.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like, partial
SwissprotQ9FK121e-155CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLV4NBA31e-154V4NBA3_EUTSA; Uncharacterized protein
STRINGXP_010474103.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-145cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]