PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g049050.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 408aa MW: 45218.1 Da PI: 6.7334

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g049050.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.5	4.3e-31	221	279	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+ Csa02g049050.1 221 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 279 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-31	207	281	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-27	213	281	IPR003657	WRKY domain
PROSITE profile	PS50811	33.281	215	281	IPR003657	WRKY domain
SMART	SM00774	6.1E-39	220	280	IPR003657	WRKY domain
Pfam	PF03106	3.8E-26	222	279	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
FRQRKSQRRP LRHSLSSSLS PHQQKQKSKE AFSKKTHEFK ITAMSSVDWD LFAVVRSCSS 60 SVSTATINTN SCVGHEDDGG NCKQQQDPPP PSPPLFTHIH GDRDSSSSCN ELQDSCKPFL 120 PVTTTTSWSP PPLLPPPPPI VSSSAPTALM KQEQVLLESQ DQKPRLGVRV FPPSTSPSVF 180 VFRGQRDQLL QQQSQPPLRS RKRKNQQKRT ICHVTQENLS SDMWAWRKYG QKPIKGSPYP 240 RNYYRCSSSK GCLARKQVER SNLDPNIFIV TYTGEHTHPR PTHRNSLAGS TRNKSQPVNP 300 IPKPDSSGQT VLGSNTVKEE IHLSPTTPLK GNDDVQGTNG DEDMISQEVN MEDEEEDVEE 360 EDDEDVGEDD DMDDLLIPNL AVRDRDDLFF AGNFSSWSAG SAGGGGG*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

FRQRKSQRRP LRHSLSSSLS PHQQKQKSKE AFSKKTHEFK ITAMSSVDWD LFAVVRSCSS  60
SVSTATINTN SCVGHEDDGG NCKQQQDPPP PSPPLFTHIH GDRDSSSSCN ELQDSCKPFL  120
PVTTTTSWSP PPLLPPPPPI VSSSAPTALM KQEQVLLESQ DQKPRLGVRV FPPSTSPSVF  180
VFRGQRDQLL QQQSQPPLRS RKRKNQQKRT ICHVTQENLS SDMWAWRKYG QKPIKGSPYP  240
RNYYRCSSSK GCLARKQVER SNLDPNIFIV TYTGEHTHPR PTHRNSLAGS TRNKSQPVNP  300
IPKPDSSGQT VLGSNTVKEE IHLSPTTPLK GNDDVQGTNG DEDMISQEVN MEDEEEDVEE  360
EDDEDVGEDD DMDDLLIPNL AVRDRDDLFF AGNFSSWSAG SAGGGGG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	222	282	18	80	Disease resistance protein RRS1
5w3x_D	1e-19	222	282	18	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g049050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF418310	0.0	AF418310.1 Arabidopsis thaliana WRKY transcription factor 27 (WRKY27) mRNA, complete cds.
GenBank	AK230436	0.0	AK230436.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-40-N05.
GenBank	BT026451	0.0	BT026451.1 Arabidopsis thaliana At5g52830 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445280.1	0.0	PREDICTED: probable WRKY transcription factor 27
Swissprot	Q9FLX8	1e-152	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A1J3E274	0.0	A0A1J3E274_NOCCA; Putative WRKY transcription factor 27
STRING	XP_010445280.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9998	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	1e-138	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]