PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g044950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 434aa    MW: 46439.2 Da    PI: 7.5624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g044950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-07118139426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+f+   G C+yGd+C++ H+
  Csa02g044950.1 118 KVCNFWVD-GNCSYGDKCRYLHC 139
                     68**9*99.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.0843561IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6114138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333114141IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5116140IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4118139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5118136IPR000571Zinc finger, CCCH-type
SuperFamilySSF509788.24E-44136196IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.5E-43137425IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.2E-5145184IPR001680WD40 repeat
PfamPF004000.0026148184IPR001680WD40 repeat
PROSITE profilePS5029421.964152392IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.015152193IPR001680WD40 repeat
PROSITE patternPS006780171185IPR019775WD40 repeat, conserved site
PRINTSPR003202.9E-6171185IPR020472G-protein beta WD-40 repeat
SMARTSM003205.9216253IPR001680WD40 repeat
SuperFamilySSF509788.24E-44226426IPR017986WD40-repeat-containing domain
SMARTSM003200.043260297IPR001680WD40 repeat
PfamPF004000.047264297IPR001680WD40 repeat
PROSITE profilePS5008211.544267306IPR001680WD40 repeat
PRINTSPR003202.9E-6284298IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4300337IPR001680WD40 repeat
PfamPF004000.0046302336IPR001680WD40 repeat
PRINTSPR003202.9E-6324338IPR020472G-protein beta WD-40 repeat
SMARTSM003206.4341383IPR001680WD40 repeat
SMARTSM003206.1386423IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDFDLNGGNK RVFNRLGGGG GGGGGGSNRS LAPTDTRQKV CFHWRAGRCN RSPCPYLHRE  60
LPGPGPGQGQ GPGYTNKRVA EESGFAGPSH RRGPGFNGNS SSSWGRFGGN RTVTKTEKVC  120
NFWVDGNCSY GDKCRYLHCW SKGDSFSLLT QLDGHEKLVS GIALPSGSDK LYTGSKDESL  180
RVWDCASGQC TGVLKLGGEV GCVLSEGPWL LAWNIETNAD QSLSGPVGQV YSLVVGTDLL  240
FAGTQDGSIL AWRYNTATNC FEPAASLTGH SLAVVTLYVG ANRLYSGSMD KSIKVWSLDN  300
LQCIQTLTDH TSVVMSLICW DQFLLSCSLD NTVKIWAAGE GGNLEVTYTH KEHGVLALCG  360
VHDAEAKPVL LCSCNDSTLR LYDLPSFTER GKIFAKQEIR AIHIGPGGIF FTGDGTGQVK  420
VWKWSTEPAT ASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-191494268323Tako8
6g6n_A6e-191494268323Tako8
6g6n_B6e-191494268323Tako8
6g6n_C6e-191494268323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g044950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520640.0AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444176.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like
RefseqXP_010444177.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like
RefseqXP_010444179.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLV4LHV70.0V4LHV7_EUTSA; Uncharacterized protein
STRINGXP_010444176.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein