PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g039150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YC | ||||||||
Protein Properties | Length: 211aa MW: 23314.7 Da PI: 5.1069 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 120.7 | 6.4e-38 | 36 | 135 | 1 | 100 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 q+++f ++qi++a++ ++helP arikki+k+++d++m+++eaP+llskace++i++lt+rswl++ + ++ +k+sdi+ avtr f+fl i Csa02g039150.1 36 QIRNFCIEQIGSASNTRKHELPPARIKKIMKSNPDLNMVATEAPILLSKACEMLIVDLTMRSWLNTLKRGQNKIKRSDISVAVTRDLSFTFLGHI 130 789******************************************************************************************** PP NF-YC 96 vprde 100 vprde Csa02g039150.1 131 VPRDE 135 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.84E-21 | 45 | 137 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.0E-25 | 48 | 118 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-14 | 55 | 118 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
METNADHHLR PLQPRPSFSN PLLSSFYPRP IPYPLQIRNF CIEQIGSASN TRKHELPPAR 60 IKKIMKSNPD LNMVATEAPI LLSKACEMLI VDLTMRSWLN TLKRGQNKIK RSDISVAVTR 120 DLSFTFLGHI VPRDESANVD DPRFVNMLIP RSEDLPPGMV IGHPVLGCNG MYFMPPQMQE 180 LPAAPGDGEE EEAVGDGEEA AGEIEESSGN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-23 | 42 | 133 | 4 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g039150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010472764.1 | 1e-155 | PREDICTED: nuclear transcription factor Y subunit C-7-like | ||||
Swissprot | Q9FGP8 | 5e-68 | NFYC7_ARATH; Nuclear transcription factor Y subunit C-7 | ||||
TrEMBL | C0SVT1 | 1e-65 | C0SVT1_ARATH; Uncharacterized protein At5g50470 (Fragment) | ||||
STRING | XP_010472764.1 | 1e-154 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20210 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50470.1 | 2e-60 | nuclear factor Y, subunit C7 |
Publications ? help Back to Top | |||
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