PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G50470.1 | ||||||||
Common Name | MBA10.2, NFYC7, NF-YC7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 212aa MW: 23195.2 Da PI: 4.9837 | ||||||||
Description | nuclear factor Y, subunit C7 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 149.5 | 6.9e-47 | 44 | 148 | 1 | 99 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk......sdiaaavtrtdifdfl 92 q++++w++q+++atd+k+h++Pl+rikki+k++++v+m++aeaPvl+skace++il+lt+rswlh+ e r+tlk+ sdi+aa+tr+++f+fl AT5G50470.1 44 QMRNYWIAQMGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRsdtltrSDISAATTRSFKFTFL 141 79*********************************************************************9988622222268************** PP NF-YC 93 vdivprd 99 d+vprd AT5G50470.1 142 GDVVPRD 148 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.53E-22 | 40 | 169 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.2E-26 | 57 | 121 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-14 | 64 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000005 | anatomy | cultured plant cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEENNGNNNH YLPQPSSSQL PPPPLYYQSM PLPSYSLPLP YSPQMRNYWI AQMGNATDVK 60 HHAFPLTRIK KIMKSNPEVN MVTAEAPVLI SKACEMLILD LTMRSWLHTV EGGRQTLKRS 120 DTLTRSDISA ATTRSFKFTF LGDVVPRDPS VVTDDPVLHP DGEVLPPGTV IGYPVFDCNG 180 VYASPPQMQE WPAVPGDGEE AAGEIGGSSG GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-30 | 52 | 147 | 6 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 248503_at | 0.0 | ||||
Expression Atlas | AT5G50470 | - | ||||
AtGenExpress | AT5G50470 | - | ||||
ATTED-II | AT5G50470 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G50470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G09030, AT1G21970 | |||||
IntAct | Search Q9FGP8 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G50470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025619 | 0.0 | AB025619.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBA10. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ056712 | 0.0 | DQ056712.1 Arabidopsis thaliana putative CCAAT-box binding transcription factor Hap5a (At5g50470) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199858.1 | 1e-157 | nuclear factor Y, subunit C7 | ||||
Swissprot | Q9FGP8 | 1e-158 | NFYC7_ARATH; Nuclear transcription factor Y subunit C-7 | ||||
TrEMBL | C0SVT1 | 1e-156 | C0SVT1_ARATH; Uncharacterized protein At5g50470 (Fragment) | ||||
STRING | AT5G50470.1 | 1e-157 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20210 | 4 | 6 |
Link Out ? help Back to Top | |
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Phytozome | AT5G50470.1 |
Entrez Gene | 835115 |
iHOP | AT5G50470 |
wikigenes | AT5G50470 |