PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g037510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 215aa    MW: 23199.8 Da    PI: 8.8973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g037510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-2172121255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Csa02g037510.1  72 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 121
                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.73972129IPR001471AP2/ERF domain
PfamPF008471.3E-1472121IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2372130IPR016177DNA-binding domain
SMARTSM003805.9E-3872135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3372130IPR001471AP2/ERF domain
PRINTSPR003673.8E-127384IPR001471AP2/ERF domain
CDDcd000184.63E-1680131No hitNo description
PRINTSPR003673.8E-1295111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVSALTQVVS GRSQTEAERA HSSSSSAGDK RGWLGIDSSP IPSSFAPVDS SLGPIEFTSK  60
ALPDEIGGKR RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAR AYDEAALRFR  120
GSKAKLNFPE DVRLLLPPPP PLPLPADTVA NKAEEDLMNY WSYSKLLQSS GQRSFIGHGQ  180
EESSNILEHS PMERPLPPSS SGQSSSDVSG PSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2469132266ATERF1
3gcc_A7e-2469132266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g037510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5803780.0AJ580378.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, clone At5g5008-like.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441531.21e-109PREDICTED: ethylene-responsive transcription factor ERF110-like, partial
SwissprotQ70II35e-92EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLA0A178U7F53e-88A0A178U7F5_ARATH; Uncharacterized protein
TrEMBLG8IQH21e-89G8IQH2_ARATH; Ethylene response factor 110
STRINGXP_010441531.11e-108(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-71ethylene response factor 110