PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa02g035860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 38874 Da PI: 6.2331 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.5e-18 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l+++++ +G g+W++ ar g++Rt+k+c++rw++yl Csa02g035860.1 28 RGPWTVEEDLELINYIANHGEGRWNSLARGAGLKRTGKSCRLRWLNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Csa02g035860.1 81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.876 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.56E-30 | 25 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-11 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 18.378 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-15 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 83 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MDDKARSLKI NKNMEDFSNV EEEMDLRRGP WTVEEDLELI NYIANHGEGR WNSLARGAGL 60 KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN 120 YWRTRVQKHA KQLRCDVNSQ QFKDTMKYLW MPRLVERIQA TSTRSVSTSS CVTTSSDQFV 180 INNNSTNMEH SGLMSNPNGH IFTSESDHSN VAVSPSSDLT ECHPQMSSQN YLDNKSDHFV 240 INNNSTNMEH SGLMSNPNGH IFTSESDHSN VAVSPSSDLT ECHPQMSSQN YLDNKSGLLG 300 DFTNGMIPNY WDSFWNIGYD EDLWLLQQQQ QGVLGNGSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 25 | 122 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa02g035860.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY519635 | 0.0 | AY519635.1 Arabidopsis thaliana MYB transcription factor (At5g49620) mRNA, complete cds. | |||
GenBank | BT026076 | 0.0 | BT026076.1 Arabidopsis thaliana At5g49620 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010440825.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 1e-140 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | D7MPC7 | 1e-145 | D7MPC7_ARALL; AtMYB78 | ||||
STRING | XP_010440825.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-127 | myb domain protein 78 |
Publications ? help Back to Top | |||
---|---|---|---|
|