PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g022880.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 264aa MW: 28686.9 Da PI: 4.7423

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g022880.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.5e-12	197	242	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L++AveY+k Lq Csa02g022880.1 197 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLQEAVEYVKVLQ 242 689*******************7....688*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.583	191	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-16	194	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.25E-12	195	246	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-16	196	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-12	197	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	197	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MQSTSVGSSG GGDDGGSRGG GGGGLSRSGL SRIRSAPATW LEALLEEDEE ESLKPNLGLT 60 DLLTGSSNDL PISRGSFEFP IPVEQGLYQQ GGFHRQNSTP ADFLSGSDGF IQSFGIPPNY 120 DYLSGNIDVS PGSKRSREME ALFSSPEFTS QMKGEQSSGQ VPAGVSSMTD MNMENLMDDS 180 VAFRVRAKRG CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKQTNTADM LQEAVEYVKV 240 LQRQIQELTE EQKRCACIPK EEQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g022880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK230384	0.0	AK230384.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL24-31-D13.
GenBank	BT010423	0.0	BT010423.1 Arabidopsis thaliana At4g09180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010435842.1	0.0	PREDICTED: transcription factor bHLH81
Swissprot	Q9M0R0	1e-155	BH081_ARATH; Transcription factor bHLH81
TrEMBL	D7LX86	1e-153	D7LX86_ARALL; Basic helix-loop-helix family protein
STRING	XP_010435842.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5104	25	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09180.1	1e-146	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]