PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g021680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 321aa    MW: 35807.9 Da    PI: 6.5779
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g021680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.4e-28136196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y+WrKYGqK++ g+++prsYYrCt++    C+++k+v+rs+ dp+++e+tY+g+H+++
  Csa02g021680.1 136 DDVYSWRKYGQKDILGAKYPRSYYRCTFRntqCCWATKQVQRSDGDPTIFEVTYRGTHTCS 196
                     8**************************99776799************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.425130193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-27131197IPR003657WRKY domain
SuperFamilySSF1182903.01E-24134197IPR003657WRKY domain
SMARTSM007743.0E-37135197IPR003657WRKY domain
PfamPF031067.8E-25136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEMMNWEQRN LLNELIHGLR AAKQLQASPA PSSSSSSSCL TYEMKETLLQ KVVSSYENAI  60
MMLNGSHNPT TERVVGPVVN SGKVPESPAS INESPKGEEF FDVGCKDYSC KKRKMLPKWT  120
EQVRISPERG LEGPHDDVYS WRKYGQKDIL GAKYPRSYYR CTFRNTQCCW ATKQVQRSDG  180
DPTIFEVTYR GTHTCSQQGN PPPHKRAETK PNQNHIEEVV NYQNNLLDNL RTNLTVRTDG  240
LEGHGFSFPF TPPPFYSYDS IHGGGATFCH VGSSGPSDFT GLISTNTSTG SSPIFDVDFH  300
FDPTAEIDTT GFPTFLHDSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17136195968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g021680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435570.10.0PREDICTED: probable WRKY transcription factor 41
SwissprotQ8H0Y81e-155WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLR0GW300.0R0GW30_9BRAS; Uncharacterized protein
STRINGXP_010435570.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-141WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]