PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g015660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 383aa MW: 43610.8 Da PI: 8.3612 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.1e-05 | 118 | 141 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+++F ++ nL +H + H Csa02g015660.1 118 YFCGVCDRRFYTNANLINHFKQiH 141 78*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 2.7E-5 | 100 | 134 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 3.22E-5 | 111 | 153 | No hit | No description |
PROSITE profile | PS50157 | 11.074 | 118 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 141 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 1.70E-13 | 184 | 270 | No hit | No description |
Pfam | PF01936 | 1.0E-6 | 190 | 270 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 2.7E-5 | 203 | 258 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MFPRIVQRVR SPKTQINSLN SIKGFSFGFS SLINPKPQIR TGVFWDLDNK PPASFPPYDA 60 AVKLRTAASS FGFVKLMVAY ANRHAFSYVP LVVREERRDR KLLNELENTG KVKPPEPYFC 120 GVCDRRFYTN ANLINHFKQI HETEHQKRMR QIESSKGHQR VRLLAKYSMK IEKYKRAARK 180 VLTPKEGYGL ADELKRAGFW VKMVSDKPEA ADVALKEHMV DVMDKREVEC VVLVSDDSGY 240 AGVLREAKER CLRTVVIGDL NEGVLKRVAD VSYSWKEVVM GKAKKEVEKV VGKWKDRDVL 300 KKLEWSYDPV LEKERGGSCG VWDYGFDCDD DEIENVTEVE IGDSGDWWKL DNEDGVASSR 360 PCQSYHTIVG IDCAEEDINL GS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 101 | ERRDRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g015660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118936 | 0.0 | AK118936.1 Arabidopsis thaliana At4g12240 mRNA for unknown protein, complete cds, clone: RAFL21-27-H22. | |||
GenBank | AL080318 | 0.0 | AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project). | |||
GenBank | AL161533 | 0.0 | AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433663.1 | 0.0 | PREDICTED: uncharacterized protein LOC104717739 | ||||
TrEMBL | R0HCK6 | 0.0 | R0HCK6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010433663.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11444 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 0.0 | C2H2 family protein |