PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g005850.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 315aa MW: 33250.5 Da PI: 6.313

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g005850.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	7.8e-09	161	205	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L Csa02g005850.1 161 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 205 99*********************55......9************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-14	154	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.802	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-14	158	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	161	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-10	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MAGNNPHENL SDQTPSDDFF EQILGLPNFS ASSGAGLSGV DGGLGGGAPP MMLQLGSGDE 60 GSHMGGLGGS GGPTGFHNQM FPLGLSLDQG KGPGSGGFLR PEGGHGSGKR FSDDVVDNRC 120 SSMKPVFHGQ PMQQPAPSAP HQPTSIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ 180 ELVPTVNKTD RAAMIDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTDM PLSSSVEDET 240 GEGGRAPQPA WEKWSNDGTE RQVAKLMEEN VGAAMQLLQS KALCMMPISL AMAIYHSQPP 300 DTSSVVKPET NPPQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g005850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF367328	0.0	AF367328.1 Arabidopsis thaliana AT4g02590/T10P11_13 mRNA, complete cds.
GenBank	AK316748	0.0	AK316748.1 Arabidopsis thaliana AT4G02590 mRNA, complete cds, clone: RAFL07-83-K16.
GenBank	AY143951	0.0	AY143951.1 Arabidopsis thaliana At4g02590/T10P11_13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429869.1	0.0	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	0.0	UNE12_ARATH; Transcription factor UNE12
TrEMBL	V4L2M5	0.0	V4L2M5_EUTSA; Uncharacterized protein
STRING	XP_010429869.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-176	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]