PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g004590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 320aa MW: 35456.9 Da PI: 6.0082 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.2e-14 | 115 | 166 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + a+i+ A+++Ik+L+ Csa02g004590.1 115 QRMTHIAVERNRRRQMNEHLNSLRSLMPPS---FLQRGDQASIVGGAIDFIKELE 166 79***************************9...89*****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-16 | 113 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 113 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.65E-13 | 113 | 170 | No hit | No description |
PROSITE profile | PS50888 | 15.72 | 114 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-12 | 115 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-11 | 120 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGGLMRFGEL EEQFAQLSDT TIEEKVPFLQ MLQCIDPNFT TAEPFLQSLL QIQTLEPKSC 60 HTFDATTIKR DPGQADDPEK DPRTEDGGAA TTVLKEKRKR KRTRAPKNKD EVENQRMTHI 120 AVERNRRRQM NEHLNSLRSL MPPSFLQRGD QASIVGGAID FIKELEQLLQ SLEAEKRNDG 180 TNETPKTTAS STSSSSRACT ANSSVSSVST TSEDGFTARF GGGETAEVEA TVIQNHVSLK 240 VRCKRGKGQI LRAIVSIEEL KLAILHLTIS SSFDFVVYSF NLKIEDGCKL GSADEIATAV 300 HQIFEQINGE MMWSNLSRT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 126 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g004590.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY099780 | 0.0 | AY099780.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds. | |||
GenBank | AY128881 | 0.0 | AY128881.1 Arabidopsis thaliana putative bHLH DNA-binding protein (At4g01460) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428341.1 | 0.0 | PREDICTED: transcription factor bHLH57-like | ||||
Swissprot | Q9M128 | 1e-178 | BH057_ARATH; Transcription factor bHLH57 | ||||
TrEMBL | R0HBR9 | 0.0 | R0HBR9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010428341.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14696 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01460.1 | 1e-165 | bHLH family protein |
Publications ? help Back to Top | |||
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