PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g002440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 432aa    MW: 48875.7 Da    PI: 5.223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g002440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.8e-12246291454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+ +       ++Ka+ L  Av YI+sL
  Csa02g002440.1 246 SHVEAERQRREKLNHRFYALRAIVPNvS------GMDKASLLSDAVSYIQSL 291
                     699***********************55......69**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-2934187IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.31242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17244307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17246307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.96E-13246296No hitNo description
PfamPF000109.6E-10246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-15248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDNNPTFCPS LSSSMLSITQ QTQAIVSSSS TDLLQQKLRF LVETSPDQWA YIIFWQKMID  60
DQSDQSYLVW VDGHFCGNKN NKSQENHTTK SIECELMMDG GDLELFYATS FYGEDGSRRR  120
ELSDESLVWL TGLDELRFSN YERAKEASFH GVHTFVSAPI HNGIIELGSS DFIKQNWNFI  180
NRVTSMFGSG QTLELTDQTG SYRKPEESDH SEIGNQQITS EKIRRTKLET TDVATAKENH  240
HSPGFSHVEA ERQRREKLNH RFYALRAIVP NVSGMDKASL LSDAVSYIQS LKTKISDLET  300
EIKRLKTILT AETDQLDYND SSNRSPSFVD KVNQRPSESN LEVEVEVKVV GDEAVVRVQT  360
ENVNHPTCAL MSTLMEMDCR VQHANASRLG QIMVQDVVVL VPDRLRSEDS IRTTLVRNLA  420
KIIKLNLAVY T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-19245309771Transcription factor MYC2
5gnj_B2e-19245309771Transcription factor MYC2
5gnj_E2e-19245309771Transcription factor MYC2
5gnj_F2e-19245309771Transcription factor MYC2
5gnj_G2e-19245309771Transcription factor MYC2
5gnj_I2e-19245309771Transcription factor MYC2
5gnj_M2e-19245309771Transcription factor MYC2
5gnj_N2e-19245309771Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g002440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428091.10.0PREDICTED: transcription factor bHLH14-like
SwissprotO230900.0BH014_ARATH; Transcription factor bHLH14
TrEMBLR0GV070.0R0GV07_9BRAS; Uncharacterized protein
STRINGXP_010428091.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]