PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02520s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BES1 | ||||||||
Protein Properties | Length: 228aa MW: 24367.1 Da PI: 6.3933 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 32.6 | 2.7e-10 | 3 | 63 | 83 | 145 |
DUF822 83 gssasaspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 g+ ++ s++ss+q s++ssa++sp++sy+ sp sssfpsps++d ++++ llp+l++ ++ Csa02520s010.1 3 GTPTNLSTNSSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNHSS--YLLLPFLHNIAS 63 7788999***************************************887..899999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.9E-6 | 3 | 47 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MSGTPTNLST NSSIQPSPQS SAFPSPAPSY HGSPVSSSFP SPSRYDGNHS SYLLLPFLHN 60 IASSIPANLP PLRISNSAPV TPPLSSPTSR GSKRKLTSEQ LLPNGGGSLH ALRHPLFAIS 120 APSSPTRRAG HQTPPTIPEC DESEEDSIED SGRWINFQST APTSPTFNLV KQTSMVIDMK 180 RSDWGMNGRG AEFEFENGTV KPWEGEMIHE VGVEDLELTL GGTKTRC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02520s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050394 | 0.0 | AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. | |||
GenBank | AY097357 | 0.0 | AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284125.1 | 1e-138 | BES1/BZR1 homolog protein 2 | ||||
Swissprot | Q94A43 | 1e-135 | BEH2_ARATH; BES1/BZR1 homolog protein 2 | ||||
TrEMBL | R0H0R8 | 1e-137 | R0H0R8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010437306.1 | 1e-163 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11512 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36780.1 | 3e-43 | BES1/BZR1 homolog 2 |