PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa01g035940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 36051.9 Da PI: 4.6389 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.1 | 3.2e-31 | 44 | 175 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 lppGf+F P+deel +yLk ++k +++ i++v+iyk++P +L ++++ +++ew+f ++r+k ++gkr++r gyW+at k Csa01g035940.1 44 LPPGFKFTPSDEELCIDYLKSFSPDRKyyyPPFNIPIHHVNIYKSNPYQLSVEFEKgNDEEWFFVTERNKIGKSGKRQKRgDDCGGYWNATVGAK 138 79********************99999886555445**************965555267799999999999999******87789********** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++ +vg + L + gr p+g+ktdW+mhey + Csa01g035940.1 139 QIDA-GQGDVGYVTALEYCVGRPPNGVKTDWLMHEYWF 175 **99.9999***************************75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-38 | 40 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.123 | 44 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 45 | 173 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MSMPSRNKRK ERSTPEPQTQ PPSEIASSSS SSSSSAAHNL PYLLPPGFKF TPSDEELCID 60 YLKSFSPDRK YYYPPFNIPI HHVNIYKSNP YQLSVEFEKG NDEEWFFVTE RNKIGKSGKR 120 QKRGDDCGGY WNATVGAKQI DAGQGDVGYV TALEYCVGRP PNGVKTDWLM HEYWFESSSD 180 DNDKVDYALC KIYLTPSAVK RMKAEKKEKL KKGKGVSKEE VKQLDLQHQQ DQSQLQQPHD 240 SLLTAQQHEP QPQPLVIPHD DNFDDFDDFD ELPQDFKDFL AEFMKPDSLD GDEELDDSDF 300 LQGFVTDGMM KDYTN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-20 | 44 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-20 | 44 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-20 | 44 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-20 | 44 | 201 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-20 | 44 | 201 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-20 | 44 | 201 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-20 | 44 | 201 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa01g035940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010424216.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_010424224.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | D7LVH1 | 1e-94 | D7LVH1_ARALL; Uncharacterized protein | ||||
STRING | XP_010424216.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010424224.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56530.1 | 1e-68 | NAC domain containing protein 64 |