PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g035930.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 316aa MW: 36051.9 Da PI: 4.6389

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g035930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.1	3.2e-31	44	175	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 lppGf+F P+deel +yLk ++k +++ i++v+iyk++P +L ++++ +++ew+f ++r+k ++gkr++r gyW+at k Csa01g035930.1 44 LPPGFKFTPSDEELCIDYLKSFSPDRKyyyPPFNIPIHHVNIYKSNPYQLSVEFEKgNDEEWFFVTERNKIGKSGKRQKRgDDCGGYWNATVGAK 138 79******************99999886555445**********965555267799999999999999**87789****** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++ +vg + L + gr p+g+ktdW+mhey + Csa01g035930.1 139 QIDA-GQGDVGYVTALEYCVGRPPNGVKTDWLMHEYWF 175 99.9999***************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-38	40	195	IPR003441	NAC domain
PROSITE profile	PS51005	38.123	44	195	IPR003441	NAC domain
Pfam	PF02365	1.4E-14	45	173	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSMPSRNKRK ERSTPEPQTQ PPSEIASSSS SSSSSAAHNL PYLLPPGFKF TPSDEELCID 60 YLKSFSPDRK YYYPPFNIPI HHVNIYKSNP YQLSVEFEKG NDEEWFFVTE RNKIGKSGKR 120 QKRGDDCGGY WNATVGAKQI DAGQGDVGYV TALEYCVGRP PNGVKTDWLM HEYWFESSSD 180 DNDKVDYALC KIYLTPSAVK RMKAEKKEKL KKGKGVSKEE VKQLDLQHQQ DQSQLQQPHD 240 SLLTAQQHEP QPQPLVIPHD DNFDDFDDFD ELPQDFKDFL AEFMKPDSLD GDEELDDSDF 300 LQGFVTDGMM KDYTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-20	44	201	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-20	44	201	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-20	44	201	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-20	44	201	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	44	201	20	174	NAC domain-containing protein 19
3swm_B	2e-20	44	201	20	174	NAC domain-containing protein 19
3swm_C	2e-20	44	201	20	174	NAC domain-containing protein 19
3swm_D	2e-20	44	201	20	174	NAC domain-containing protein 19
3swp_A	2e-20	44	201	20	174	NAC domain-containing protein 19
3swp_B	2e-20	44	201	20	174	NAC domain-containing protein 19
3swp_C	2e-20	44	201	20	174	NAC domain-containing protein 19
3swp_D	2e-20	44	201	20	174	NAC domain-containing protein 19
4dul_A	2e-20	44	201	17	171	NAC domain-containing protein 19
4dul_B	2e-20	44	201	17	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g035930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010424216.1	0.0	PREDICTED: NAC transcription factor 29-like
Refseq	XP_010424224.1	0.0	PREDICTED: NAC transcription factor 29-like
TrEMBL	D7LVH1	1e-94	D7LVH1_ARALL; Uncharacterized protein
STRING	XP_010424216.1	0.0	(Camelina sativa)
STRING	XP_010424224.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	1e-68	NAC domain containing protein 64