PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g035540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 333aa    MW: 36966.8 Da    PI: 4.5826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g035540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.8e-082602971355
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Csa01g035540.1 260 RERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 297
                     89**************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.369247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-6258302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-10260305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-5260297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-10260311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-8260301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEAMGEWSTG LGGMYTEEAD FMNQLLASYE QPCGGSSSET TATLAAYHHG QGSQWTGGFC  60
FSQESRSYSG YCTVVPQQEE DDNKMEDSTI NTDLYLVGEE TCECDVAEYS RKSLLPLENA  120
EESHDHNVLQ PENSLTTTTT DEKLLRPCES SKKRMRATST DKNKRANKTR RSQKGVEMSG  180
DNDNSGEEED TEKAAGKRKN KPSKPQKTCC SDDESNGGET FLSKEDGEDS KALNLNGKTR  240
ASRGAATDPQ SLYARVIYTR ERINERLRIL QNLVPNGTKV DISTMLEEAV QYVKFLQLQI  300
KLLSSDDLWM YAPIAYNGMD IGLDLKLNAL TR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g035540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775840.0AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464970.0DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517738.10.0PREDICTED: transcription factor bHLH84
SwissprotQ7XHI90.0BH084_ARATH; Transcription factor bHLH84
TrEMBLD7L2Q60.0D7L2Q6_ARALL; Basic helix-loop-helix protein
STRINGXP_010517738.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.10.0bHLH family protein