PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g033160.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 257aa MW: 28045.4 Da PI: 6.4986

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g033160.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.9	1.2e-09	86	129	8	51
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r NReA r++R++Kka+ + Le++v L+a N +L k+l+ Csa01g033160.1 86 KRPLGNREAVRKYREKKKAKAASLEDEVRRLTAVNNQLMKRLQG 129 77788**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.9E-15	71	147	No hit	No description
SMART	SM00338	3.4E-10	79	146	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	7.1E-15	80	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.691	81	128	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.45E-8	84	128	No hit	No description
CDD	cd14686	1.37E-11	85	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDDGELEFSN SNMVGELLPS SCSMDSFFDE LLRDSHACTH THTCNPSGPE NNTHTHTCLH 60 VHTKILPSQS EDKVSTDDTS ESSGKKRPLG NREAVRKYRE KKKAKAASLE DEVRRLTAVN 120 NQLMKRLQGQ AALEAEVTRL KCLLVDIRGR IDGEIGSFPY QKPAVANVPF SYMMHPCNMQ 180 CDVDNMYCLQ NENNGEGASM NEQGLNGCEF DQLQCLANQN LAGKEIPLCS NGVGTFTVNG 240 SSASKRKGGS RAAKAV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g033160.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117479	0.0	AK117479.1 Arabidopsis thaliana At2g16770 mRNA for putative bzip transcription factor atbzip23, complete cds, clone: RAFL17-09-E13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516149.1	0.0	PREDICTED: basic leucine zipper 23
Refseq	XP_010516157.1	0.0	PREDICTED: basic leucine zipper 23
Swissprot	Q8GTS2	1e-169	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	D7L871	1e-174	D7L871_ARALL; DNA binding protein
STRING	XP_010516149.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-156	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]