PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g032010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 327aa MW: 36597.4 Da PI: 4.0451 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.2 | 3.8e-07 | 13 | 49 | 3 | 39 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 i k r v fskR +g+ A E++ da++a++ Csa01g032010.1 13 IGKKDSRAVAFSKRTKGLYSEAAEICLHADAQIAILA 49 667889****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.054 | 3 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-4 | 3 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.35E-16 | 5 | 81 | No hit | No description |
SuperFamily | SSF55455 | 1.12E-11 | 5 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-7 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGGVKRKIPI EMIGKKDSRA VAFSKRTKGL YSEAAEICLH ADAQIAILAT PVSSNSNVSF 60 YSFGHSSVDN VVAAFLANKR PREDLGLGLG FWWEDERLAK SEDPEELRDA MNSMSKMLQY 120 LKELRRDCED VEKKGLVDKT HQNHTLNPES CCDNKNNYAL LGNVEDGCNQ ELLDIDQIIN 180 FESTSSSVNS ELENISMVTP NQNSFSDSKA IVDEELVVHT DLYDDIIHLS NLDEDVMLPI 240 SDNNNNNNNN NVLSENFDEF IQELDLDQIF DFETNYMQSL EMDGVSMVTT NSETVGHGGL 300 LTHIDLDEDN LCFSDYFNEL TSPDPI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g032010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514729.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Refseq | XP_010514742.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 5e-55 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A178UP04 | 1e-121 | A0A178UP04_ARATH; AGL99 | ||||
TrEMBL | Q9LZ61 | 1e-121 | Q9LZ61_ARATH; AGAMOUS-like 99 | ||||
STRING | XP_010514729.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010514742.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16711 | 2 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04640.1 | 1e-114 | AGAMOUS-like 99 |
Publications ? help Back to Top | |||
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