PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g025310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 282aa    MW: 31583.6 Da    PI: 6.4463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g025310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-081742111355
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R++i +++ +L +l+P+      +K+s a iLe+A +YIk Lq
  Csa01g025310.1 174 RKKISNKIRTLEKLMPWE-----RKMSLAVILEEAHKYIKFLQ 211
                     99***************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.115161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-9172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.004172216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5174211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-8174216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-5174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MESSAYEFDS LTDLPPLPEE YKPTVVDYSP SFDSLPPFPP SDFTFSDHHH QHYLDSSLSL  60
SDSLFLDSTL SLLNLHHLSE SPRLEQNLFY EQLFPNNDSA AAPFLHLPDL KSIEQTTTTV  120
EEPTLKTMKL FPSLSPPPPA KRHKKLHSST SSTASGSPTA SSSHNTNYGG HNQRKKISNK  180
IRTLEKLMPW ERKMSLAVIL EEAHKYIKFL QSQIDSLLWM PLDSVYNTAG EVGESDLLKS  240
LTRQQILQVL ANSPGSRNVL STHGLCVFSY EQLLKAMSRN L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g025310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510900.10.0PREDICTED: transcription factor bHLH117-like
SwissprotQ9LRJ41e-100BH117_ARATH; Transcription factor bHLH117
TrEMBLR0GAQ11e-118R0GAQ1_9BRAS; Uncharacterized protein
STRINGXP_010510900.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]