PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g022890.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 286aa MW: 31972.7 Da PI: 8.6299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g022890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.9e-09	7	55	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + rE+ RR+++N+ f eL +l + +K++Ka+iL+ +v+ +k+L Csa01g022890.1 7 KSQKAGREKLRREKLNEHFVELGNVLDPE----RPKNDKATILTNTVQLLKEL 55 5566779****************9987....69*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.052	5	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-12	5	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-13	5	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.50E-6	6	59	No hit	No description
Pfam	PF00010	8.7E-7	7	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-6	11	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTNTVQ LLKELTSEVN 60 KLKSEYTALT DESRELTQEK NDLREEKTAL KSDIENLNLQ YQQRLRSMSP WGAAMDHTVM 120 MASPPSFPYP MPMAMPPGSI PMHPSMPSYT YFENQNPSMI PAPSPTYMPY MPPNTVVEQQ 180 SVHIPQNPPG SRSREPRAKV SRESRSEKAE DSNEVATQLE LKTPGSTSDK DTVQRPEKTK 240 RCKRNNNNNS TEESSHSSKC SSSPSIRDHS SSSSVAGGQK PDDAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g022890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317507	0.0	AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBank	AY065107	0.0	AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBank	AY081703	0.0	AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508140.1	0.0	PREDICTED: transcription factor bHLH121-like
Refseq	XP_010508149.1	0.0	PREDICTED: transcription factor bHLH121-like
Swissprot	Q9LT23	1e-174	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1I9LN90	1e-173	A0A1I9LN90_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	XP_010508140.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-163	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]