PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g019080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 723aa    MW: 77586.5 Da    PI: 8.802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g019080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.3e-13147191347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   Csa01g019080.1 147 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 191
                      7*******************************************9 PP
2Myb_DNA-binding40.85.3e-13468512347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   Csa01g019080.1 468 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 512
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.101.2E-4220IPR001878Zinc finger, CCHC-type
SMARTSM003430.67420IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129414.473140196IPR017930Myb domain
SMARTSM007177.2E-9144194IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-16146194IPR006447Myb domain, plants
SuperFamilySSF466892.39E-15146196IPR009057Homeodomain-like
CDDcd001679.56E-9147192No hitNo description
Gene3DG3DSA:1.10.10.603.6E-10147190IPR009057Homeodomain-like
PfamPF002492.0E-10147191IPR001005SANT/Myb domain
Gene3DG3DSA:4.10.60.101.2E-4335356IPR001878Zinc finger, CCHC-type
SMARTSM003430.67339355IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.516461517IPR017930Myb domain
SuperFamilySSF466892.09E-16463517IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17464515IPR006447Myb domain, plants
SMARTSM007171.5E-9465515IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-10468511IPR009057Homeodomain-like
CDDcd001679.56E-9468513No hitNo description
PfamPF002492.0E-10468512IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGTCGGGGGG GGGGSCSSSA VKLFGVRLTD GSIIKKSASM  60
GNLSALAVAA AVATTHHRLS PSSPLATSNH NESPLSDHAR YSGLHHNEGY LSDDPAHGSG  120
SSHRRGERKR GKKGHDFTWV ASLVGIPWTE EEHRLFLVGL QKLGKGDWRG ISRNYVTSRT  180
PTQVASHAQK YFIRHTSSSR RKRRSSLFDM VTDEMVTDSS PTQEDQTVNR SSPSKELENK  240
SYLPSLELSL NNTTEPEAVI AKAPPQEQPE EAIEPSNGVS PMLVPGGFFP PCFPVTYTIW  300
LPATSTSLQG TEHVLEAETS SQXXXXXXXL CVFVRMTRRC SHCSNNGHNS RTCPTRGTCG  360
GGGGGGGGGS CSSSAVKLFG VRLTDGSIIK KSASMGNLSA LAVAAAVATT HHRLSPSSPL  420
ATSNHNESPL SDHARYSGLH HNEGYLSDDP AHGSGSSHRR GERKRGIPWT EEEHRLFLVG  480
LQKLGKGDWR GISRNYVTSR TPTQVASHAQ KYFIRHTSSS RRKRRSSLFD MVTDEMVTDS  540
SPTQEDQTVN RSSPSKELEN KSYLPSLELS LNNTTEPEAV IAKAPPQEQP EEAIEPSNGV  600
SPMLVPGGFF PPCFPVTYTI WLPATSTSLQ GTEHVLEAET SSQQHQVLKP KPGFAKERVN  660
MDELVGMSQL SIGMGTRHET ETSPSASPLS LKLEPSRPSA FHSNGSVNGA GLSKGNSAIQ  720
AI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g019080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0058320.0BT005832.1 Arabidopsis thaliana At3g16350 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504183.10.0PREDICTED: uncharacterized protein LOC104781253
TrEMBLR0HYV30.0R0HYV3_9BRAS; Uncharacterized protein
STRINGXP_010504183.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein