PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g011360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 451aa    MW: 50959.8 Da    PI: 6.338
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g011360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.5e-53271541128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatgkd+e+ 
  Csa01g011360.1  27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIR 120
                     579************************999.99**************8544899999************************************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + +l g+kktLvf++grap+g +t+Wvmheyrl
  Csa01g011360.1 121 R-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-6120178IPR003441NAC domain
PROSITE profilePS5100557.44227177IPR003441NAC domain
PfamPF023651.4E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGRESLPAVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG  60
EVDIYKHEPW DLAVFSRLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR  120
RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE NNGSLLDAYV LCRVFHKNNI  180
GPPSGNRYAP FMEEEWADGG GALIPGVDVR VRVEPQPQAN GHNQMDQEIH SASKNLININ  240
ELPRDGTPMD IEPNQQNHRE SDIKPQEHNN RNGYDEDEET LKREHAEEDE RRPSVCILNK  300
EAPLPLLQYK RRRQNESSNN SSRNSQDHCS STITTVDNTT TLISSSAAAT NTAISALLEF  360
SLMGISDKKE NQQQQLRPHK EATPPTPLAS SEEKVNDLQK EIHQMSVERE TFKLEMMSAE  420
AMISILQSRI DALRQENEEL KKNNASGQAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-502217912167NO APICAL MERISTEM PROTEIN
1ut4_B8e-502217912167NO APICAL MERISTEM PROTEIN
1ut7_A8e-502217912167NO APICAL MERISTEM PROTEIN
1ut7_B8e-502217912167NO APICAL MERISTEM PROTEIN
3swm_A7e-502217915170NAC domain-containing protein 19
3swm_B7e-502217915170NAC domain-containing protein 19
3swm_C7e-502217915170NAC domain-containing protein 19
3swm_D7e-502217915170NAC domain-containing protein 19
3swp_A7e-502217915170NAC domain-containing protein 19
3swp_B7e-502217915170NAC domain-containing protein 19
3swp_C7e-502217915170NAC domain-containing protein 19
3swp_D7e-502217915170NAC domain-containing protein 19
4dul_A8e-502217912167NAC domain-containing protein 19
4dul_B8e-502217912167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g011360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0597950.0AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
GenBankAY0912620.0AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484822.10.0PREDICTED: NAC domain-containing protein 13-like
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLR0G4Z30.0R0G4Z3_9BRAS; Uncharacterized protein
STRINGXP_010484780.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.20.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]