PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g009140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 322aa    MW: 36297.2 Da    PI: 7.9393
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g009140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.5e-06527326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    + lC+ f+  G C  G++C F+H+
  Csa01g009140.1  5 RILCK-FFVHGSCLKGENCEFSHD 27
                    569**.7777*************6 PP
2zf-CCCH231.4e-073555526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G+C yG+rC++ H+
  Csa01g009140.1 35 VCTFYQK-GICYYGSRCRYDHV 55
                    5******.*************7 PP
3zf-CCCH21.34.8e-07107129326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  Csa01g009140.1 107 YPICS-FAAAGDCPRGNQCPHMHG 129
                     79999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.037229IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4730IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8823057IPR000571Zinc finger, CCCH-type
SMARTSM003560.0223156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-53254IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-53555IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.399104131IPR000571Zinc finger, CCCH-type
SMARTSM003560.041106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.42E-13162237No hitNo description
Gene3DG3DSA:3.30.40.104.2E-10166232IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00132172232No hitNo description
PfamPF000974.4E-8173230IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.9E-7173230IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.401173231IPR001841Zinc finger, RING-type
PROSITE patternPS005180197206IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.929260289IPR000571Zinc finger, CCCH-type
SMARTSM003560.32260288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSSDRILCKF FVHGSCLKGE NCEFSHDSKD PPNNVCTFYQ KGICYYGSRC RYDHVRASSN  60
LPRPPLTSDS ESLDRSLSST TPSRRNLQQQ QGDEKSSNVY CINPRDYPIC SFAAAGDCPR  120
GNQCPHMHGD LCATCGKKCL HPFRPEEREE HTKECVKKQK HIEALKRSQD IECSVCLDRV  180
LSKATPGERK FGLLTECDHP FCIQCIRNWR SSAPVSGMDV NSTLRACPIC RKLSYFVVPS  240
VVWYSTPEEK KEIIDIYKAK LRSIDCKHFN FGNGSCPFGA SCFYKHAYSD GHLEEVVLRH  300
LGTQEGDNIR LSELLGGLQI F*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g009140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010461709.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLR0G6500.0R0G650_9BRAS; Uncharacterized protein
STRINGXP_010461709.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.20.0C3H family protein