PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g005590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 617aa    MW: 67589.9 Da    PI: 5.0817
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g005590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.2e-15435473240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnC+kskClk+YC+Cf+ag +C e C+C+dC+Nk 
  Csa01g005590.1 435 SCKRCNCRKSKCLKLYCDCFSAGLYCVEPCSCQDCFNKP 473
                     589**********************************96 PP
2TCR53.64.4e-17521561242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     +++gCnCkks ClkkYCeCf  g+ Cs++C+C +CkN+ ++
  Csa01g005590.1 521 HTRGCNCKKSGCLKKYCECFMMGVGCSSNCRCMGCKNNFDH 561
                     889**********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-16434475IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.852435560IPR005172CRC domain
PfamPF036388.9E-11437472IPR005172CRC domain
SMARTSM011149.0E-20520561IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12523558IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MDTPDKNRIP AVSFLNFEDS PVFQYINDLS PIEPLKPARP ENISHSLAFT SPSSLFSSPL  60
LSSSRFSMKR HRSQVLSSPV VLIGETVKNS PDALEAVKIT GLSEEQLPNV SESKPFHEQI  120
CLAIELANSL KHGRDGVDVQ MASSDDEPMD ADIEIGRSGG SRELSDELCI QSNDPADFDA  180
DSEVVLQTEE MEAHSVFGTE KSMFDVAGIQ NSEQQIPKIT APIFDSFASE PQQFSICCNN  240
SANVVDPGCS YSVQVAAGAP DITLSSSPKV ATIDSTIVLM QRSVRRRCLT FDVGGSHKRI  300
PLRDSTNDLS LDLTSINKAP SPQECSDTSK QDTDGILPLA LTIGLHLNGL VNPSVSGDRN  360
KKSFKDGRFF PLGPTTFHHN IEDEYSTPVS TKRDLVYSDI KFMESPERSL EGKCFDQHMA  420
TEYRQLFQGL DELGSCKRCN CRKSKCLKLY CDCFSAGLYC VEPCSCQDCF NKPIHEDLVM  480
KTREVIEARN PLAFAPKVVS TSNSAINLWD ENSKTPASAR HTRGCNCKKS GCLKKYCECF  540
MMGVGCSSNC RCMGCKNNFD HTNEKCAGES DAVTINDEVK DNDYHGGASS SGFSFSAKTK  600
IPQREREGTA FCSQVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1943756512127Protein lin-54 homolog
5fd3_B6e-1943756512127Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g005590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419332.10.0PREDICTED: protein tesmin/TSO1-like CXC 4 isoform X2
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLA0A178VLW70.0A0A178VLW7_ARATH; Uncharacterized protein
TrEMBLR0HXB60.0R0HXB6_9BRAS; Uncharacterized protein
STRINGXP_010419273.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein