PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g004890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21523 Da PI: 9.7665 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.2 | 8e-17 | 14 | 63 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+++n+ r + fskR+ gi+KK +EL +Cd+eva+++fs+ gk y+++ Csa01g004890.1 14 KKVDNYGDRMIAFSKRKGGIFKKLNELVSMCDVEVAILVFSQAGKPYTFA 63 578999******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-19 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.23E-21 | 6 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.862 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-18 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGRKTKGKQK IEMKKVDNYG DRMIAFSKRK GGIFKKLNEL VSMCDVEVAI LVFSQAGKPY 60 TFAFPSINEV AARLKNPSGQ ELFAKGHTGL LVEAYKKQRI HDDIVKMEAL EEELALDLDK 120 LKEVKKSRKE KKLDKMWWNI PEEGLSMKDM QRRHQALVEL HEMFFPLMVK DGGSSSSGSL 180 GCDHSGGSAS D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g004890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417570.1 | 1e-139 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7L216 | 2e-83 | D7L216_ARALL; MADS-box family protein | ||||
STRING | XP_010417570.1 | 1e-138 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 2e-61 | AGAMOUS-like 57 |