PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g004860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 395aa    MW: 45240.2 Da    PI: 9.0405
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g004860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.3e-52501801128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+ +yL+kkv++ +++l ++i++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++
  Csa01g004860.1  50 LPPGFRFHPTDEELILHYLRKKVSSFPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVA 143
                     79***************************9.89***************988899**************************************998 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++e++g+kk Lvfy+g+ pkg+kt+W+mheyrl
  Csa01g004860.1 144 ngqgSHENIGIKKALVFYRGKPPKGVKTNWIMHEYRL 180
                     66666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6247224IPR003441NAC domain
PROSITE profilePS5100560.25150224IPR003441NAC domain
PfamPF023651.0E-2751180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
LSSFFFSLVL TQKKKTIFLL CLSIKIFLFT LDFKISLKET MISKDPRSSL PPGFRFHPTD  60
EELILHYLRK KVSSFPVPLS IIADVDIYKS DPWDLPAKAP FGEKEWYFFS PRDRKYPNGA  120
RPNRAAASGY WKATGTDKLI AVANGQGSHE NIGIKKALVF YRGKPPKGVK TNWIMHEYRL  180
AESLSPKIIN SSSSQINNLG DRTLKSKEYS MRLDDWVLCR IYKKSHASVS SPDVTSVTSN  240
QEQEEIENEP FVDRGTFLQN EQQPLKRQKS SFSNLLDATD FTFLTNFLNE TPEIRTESDF  300
SFMVSNFSNP DIYGNHYLDQ KLPQLSSPTS ETSGIGNKRE RLDFAEETMN VSKKMMNYYS  360
YNNSIDQLDH SMIQQSSFLN QELLMSSHSH YQGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-694922819172NAC domain-containing protein 19
3swm_B1e-694922819172NAC domain-containing protein 19
3swm_C1e-694922819172NAC domain-containing protein 19
3swm_D1e-694922819172NAC domain-containing protein 19
3swp_A1e-694922819172NAC domain-containing protein 19
3swp_B1e-694922819172NAC domain-containing protein 19
3swp_C1e-694922819172NAC domain-containing protein 19
3swp_D1e-694922819172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g004860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274170.0AK227417.1 Arabidopsis thaliana mRNA for NAM-like protein, complete cds, clone: RAFL14-07-D22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518139.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ84TD60.0NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A178VJ790.0A0A178VJ79_ARATH; NAC047
STRINGXP_010518139.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.10.0NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]