PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g002880.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 477aa MW: 55278.3 Da PI: 5.449

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g002880.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176	1.1e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v Csa01g002880.1 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6345667999********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+y+grap+g +t Wvmheyrl Csa01g002880.1 100 W-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.025	6	157	IPR003441	NAC domain
Pfam	PF02365	7.0E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHAMSNVSG 180 NCSSSFENCS DLEISSTTHQ VQNTFQPRFG NERFNSNAIS NDDWSQYYGS SYRPFPTPYK 240 ANTEIECSML QHNISLPPLR VENSVVSDCD FFTSMTQNND HGVLDDFTFA ASNSNHYNSV 300 NDKVFHVGNY DEQLRTSNHH INQAGYIEEQ KIISSLDDAD QDLGFHGNNT SDNIDIEDFF 360 SFDIYNEENV TRIEDNEHVN TNETLDSPGF EVVEEETRFN NQMLISTYQT TKILYHQVVP 420 SHTLKVHVNH NVEERTLFIE EDKDSWLQRA EKITKTKLTL CSLMAQQYYK FLAIFF*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHAMSNVSG  180
NCSSSFENCS DLEISSTTHQ VQNTFQPRFG NERFNSNAIS NDDWSQYYGS SYRPFPTPYK  240
ANTEIECSML QHNISLPPLR VENSVVSDCD FFTSMTQNND HGVLDDFTFA ASNSNHYNSV  300
NDKVFHVGNY DEQLRTSNHH INQAGYIEEQ KIISSLDDAD QDLGFHGNNT SDNIDIEDFF  360
SFDIYNEENV TRIEDNEHVN TNETLDSPGF EVVEEETRFN NQMLISTYQT TKILYHQVVP  420
SHTLKVHVNH NVEERTLFIE EDKDSWLQRA EKITKTKLTL CSLMAQQYYK FLAIFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-55	1	157	12	165	NAC domain-containing protein 19
4dul_B	2e-55	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00329	DAP	Transfer from AT3G03200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g002880.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT030461	0.0	BT030461.1 Arabidopsis thaliana At3g03200 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507160.1	0.0	PREDICTED: NAC domain-containing protein 45
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A178VIZ2	0.0	A0A178VIZ2_ARATH; NAC045
STRING	XP_010507160.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]