PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa00657s020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 388aa MW: 44475.3 Da PI: 6.6259 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 81 | 103 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + s L++H H Csa00657s020.1 81 CSydGCGKTFFDVSALRKHSHIH 103 78889**************7766 PP | |||||||
2 | zf-C2H2 | 16.7 | 2e-05 | 108 | 132 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H Csa00657s020.1 108 YVCNhaGCGKKFLDSSKLKRHYLIH 132 99*******************9988 PP | |||||||
3 | zf-C2H2 | 20.9 | 9.2e-07 | 138 | 162 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk Fs nL++H++tH Csa00657s020.1 138 FVCNyeGCGKAFSLDFNLRSHMKTH 162 89**********************9 PP | |||||||
4 | zf-C2H2 | 12.8 | 0.00036 | 168 | 193 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cgk++ + + L++H H Csa00657s020.1 168 HICPysGCGKRYAHEYKLRNHVIAyH 193 68*******************87655 PP | |||||||
5 | zf-C2H2 | 12.9 | 0.00033 | 230 | 255 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+++ H Csa00657s020.1 230 YACPyeGCEKAYIHEYKLKLHLKReH 255 89*********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-14 | 74 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 79 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0053 | 79 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.88E-9 | 82 | 132 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-13 | 105 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.5E-4 | 108 | 132 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.42 | 108 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 132 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.66E-15 | 119 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-20 | 128 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 7.9E-4 | 138 | 162 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.799 | 138 | 167 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 140 | 162 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 165 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0089 | 168 | 193 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 170 | 193 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.05E-5 | 225 | 253 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-8 | 227 | 252 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.533 | 230 | 260 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 230 | 255 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 232 | 255 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MEHPNYPYQN PFERRPILKS KAPAVKWIKE WVPQDIVATG GKCYLHKWVT EDTLKRLTEK 60 EKEPDVPEPE PEPTTEILFL CSYDGCGKTF FDVSALRKHS HIHGERQYVC NHAGCGKKFL 120 DSSKLKRHYL IHTGERAFVC NYEGCGKAFS LDFNLRSHMK THSQENYHIC PYSGCGKRYA 180 HEYKLRNHVI AYHEKNGAGE TPKYTPPAEK VSRTVKTPAA VFGASPDRPY ACPYEGCEKA 240 YIHEYKLKLH LKREHPGHLP EENAENPTLN KHSGNDTNDV DNGSDQDVYR KHASNGKSQT 300 HKQPSRTKPN MRTPPAKVGK KGSTSSPAKV RIANKPWQAK EAFEEVEREE LEEDSEETEE 360 DRENVDDGWR FGENNEEDDD EETEYED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 2e-37 | 81 | 192 | 8 | 117 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa00657s020.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB073162 | 0.0 | AB073162.1 Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F8H12. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010496789.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
Swissprot | Q2V3L3 | 0.0 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | R0H7H0 | 0.0 | R0H7H0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010496789.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5859 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 0.0 | C2H2 family protein |
Publications ? help Back to Top | |||
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