PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa00441s040.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 665aa    MW: 72793.3 Da    PI: 4.8682
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa00441s040.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.63e-3687176398
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     f r+wseeDei+lLqG+idfka++g+sp+dd+++f+  +k+sisf++sk+q+veKir+LK+K+ k ++        sf k+hd+k+f+l++ iWg
  Csa00441s040.2  87 FARIWSEEDEISLLQGMIDFKAEKGTSPYDDMNGFFLGAKDSISFDASKTQFVEKIRSLKNKYFKGKDS------RSFLKPHDKKCFKLASCIWG 175
                     89*************************************************************998877......8******************9 PP

          DUF573  98 s 98 
                     s
  Csa00441s040.2 176 S 176
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-2887175IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
PPSASSSSDE EEVESSSSGE EEDEEEQQQL SISDEHKDPS PKPLKTPSTT AAAAAAQSSG  60
SAKKRASEEE NEEHAKRAKT LSQKSPFARI WSEEDEISLL QGMIDFKAEK GTSPYDDMNG  120
FFLGAKDSIS FDASKTQFVE KIRSLKNKYF KGKDSRSFLK PHDKKCFKLA SCIWGSDDGV  180
ALLDSAPVVT VAVISSNKVD KKKKLEFGDE EMQVLGSDDG MALLDSAPPV KSPPVAVTPA  240
VKSPPVAVIS NKVDKKKKKK KLEVEDEEMK VLGSDDGMVL LDSTPAVTVA VISNKVDKKN  300
KKKKKKKLEV EDEEMLGSDG VESAEVVKAK VDMVEEDKEV VILDGDSESS DLFDKSFVVP  360
LIVSLAGVNE CSLKQKWSKM PVETKKRIED KLKLVEAKEF ELLLLNLKIL NFVQAFIGVS  420
IIIYSIWMLH EYNRHLPVDP PPAASSSSGI EIPKVSEPLK NPIDYMASIV LGSSGGDHGF  480
NLRSLDLPAP WFIYSFMAVG ILVCIVTFIG FIAAEAINGC CLFLKYSILK TLLILLEAAL  540
VAYIAIDRHW EKDLPYDPTG ELSTLRAFIE ENIDICKWVG IAVVAVQLLS LLLAMVLRAM  600
VSTPKPELDE EEGYENPRVR AYDPLLGPQG NQASGGSSKI ENWSSRIREK YGLNQSQAAV  660
NPKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253261DKKKKKKKL
2297305KKNKKKKKK
3300306KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa00441s040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0545700.0AY054570.1 Arabidopsis thaliana Unknown protein (At2g20230; F11A3.22) mRNA, complete cds.
GenBankAY0884750.0AY088475.1 Arabidopsis thaliana clone 6967 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495915.10.0PREDICTED: probable transcription factor At1g44810
STRINGXP_010495915.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00238.12e-32DNA-binding storekeeper protein-related transcriptional regulator